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10 merged results for "Golisano College of Computing and Information Sciences"

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  1. A Survey of Pretrained Protein Language Models.

    Pokharel S, Pratyush P, Chaudhari M, Heinzinger M · 2025 · Methods in molecular biology (Clifton, N.J.)

    limited evidence Transparent signal score 43/100 · policy 1.0.0

    Found in pubmed · DOI 10.1007/978-1-0716-4623-6_1

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    • cautionMetadata completeness: 5 of 6 scored descriptive metadata groups are present; missing fields increase uncertainty. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer

  2. Large Context, Deeper Insights: Harnessing Large Language Models for Advancing Protein-Protein Interaction Analysis.

    U K, Zhang SM, Pokharel S, Pratyush P · 2025 · Methods in molecular biology (Clifton, N.J.)

    limited evidence Transparent signal score 43/100 · policy 1.0.0

    Found in pubmed · DOI 10.1007/978-1-0716-4623-6_15

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    • cautionMetadata completeness: 5 of 6 scored descriptive metadata groups are present; missing fields increase uncertainty. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer

  3. Large Language Model (LLM)-Based Advances in Prediction of Post-translational Modification Sites in Proteins.

    Pratyush P, Pokharel S, Schulze S, Bramer L · 2025 · Methods in molecular biology (Clifton, N.J.)

    limited evidence Transparent signal score 43/100 · policy 1.0.0

    Found in pubmed · DOI 10.1007/978-1-0716-4623-6_19

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    • cautionMetadata completeness: 5 of 6 scored descriptive metadata groups are present; missing fields increase uncertainty. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer

  4. Graph Neural Network-Based Approaches for Protein Function Prediction.

    Chaudhari M, Bahmani S, Pratyush P, Garrett S · 2025 · Methods in molecular biology (Clifton, N.J.)

    limited evidence Transparent signal score 43/100 · policy 1.0.0

    Found in pubmed · DOI 10.1007/978-1-0716-4662-5_3

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    • cautionMetadata completeness: 5 of 6 scored descriptive metadata groups are present; missing fields increase uncertainty. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer

  5. Multitask Learning-Based Approaches for Protein Function Prediction.

    Bahmani S, Chaudhari M, Carrier C, Garrett S · 2025 · Methods in molecular biology (Clifton, N.J.)

    limited evidence Transparent signal score 43/100 · policy 1.0.0

    Found in pubmed · DOI 10.1007/978-1-0716-4662-5_4

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    • cautionMetadata completeness: 5 of 6 scored descriptive metadata groups are present; missing fields increase uncertainty. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer

  6. Intrinsic DNA codes govern distinct modes of nucleosome-transcription factor interactions.

    Carson CW, Umesh Nagalakshmi S, Adhikari I, Freewoman JM · 2026 · Nature communications

    limited evidence Transparent signal score 45/100 · policy 1.0.0

    Found in pubmed · DOI 10.1038/s41467-026-74448-4

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    • supportingOpen access status: Normalized open-access status: open. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer
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    • cautionMetadata completeness: 5 of 6 scored descriptive metadata groups are present; missing fields increase uncertainty. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer

  7. PLM-DBPs: enhancing plant DNA-binding protein prediction by integrating sequence-based and structure-aware protein language models.

    Pokharel S, Barasa K, Pratyush P, Kc DB · 2025 · Briefings in bioinformatics

    limited evidence Transparent signal score 45/100 · policy 1.0.0

    Found in pubmed · DOI 10.1093/bib/bbaf245

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    • supportingOpen access status: Normalized open-access status: open. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer
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    • cautionMetadata completeness: 5 of 6 scored descriptive metadata groups are present; missing fields increase uncertainty. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer

  8. Machine learning-based determination of sex-related bladder cancer biomarkers.

    Pizzi JR, Adhikari I, Prakash P, Shi H · 2026 · Frontiers in bioinformatics

    limited evidence Transparent signal score 45/100 · policy 1.0.0

    Found in pubmed · DOI 10.3389/fbinf.2026.1794098

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    • supportingOpen access status: Normalized open-access status: open. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer
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    • cautionMetadata completeness: 5 of 6 scored descriptive metadata groups are present; missing fields increase uncertainty. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer

  9. Machine-learning-based determination of sex-related bladder cancer biomarkers.

    Pizzi JR, Adhikari I, Prakash P, Miyamoto H · 2025 · bioRxiv : the preprint server for biology

    limited evidence Transparent signal score 45/100 · policy 1.0.0

    Found in pubmed · DOI 10.64898/2025.12.20.695175

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    • supportingOpen access status: Normalized open-access status: open. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer
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    • cautionMetadata completeness: 5 of 6 scored descriptive metadata groups are present; missing fields increase uncertainty. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer

  10. Bayesian Neighborhood Adaptation for Graph Neural Networks.

    Regmi P, Li R, Kc K · 2025 · Transactions on machine learning research

    uncertain Transparent signal score 50/100 · policy 1.0.0

    Found in pubmed · no DOI

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    • cautionMetadata completeness: 5 of 6 scored descriptive metadata groups are present; missing fields increase uncertainty. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer