EasyMetagenome: A user-friendly and flexible pipeline for shotgun metagenomic analysis in microbiome research.

Bai D, Chen T, Xun J, Ma C, Luo H, Yang H, Cao C, Cao X, Cui J, Deng YP, Deng Z, Dong W, Dong W, Du J, Fang Q, Fang W, Fang Y, Fu F, Fu M, Fu YT, Gao H, Ge J, Gong Q, Gu L, Guo P, Guo Y, Hai T, Liu H, He J, He ZY, Hou H, Huang C, Ji S, Jiang C, Jiang GL, Jiang L, Jin LN, Kan Y, Kang D, Kou J, Lam KL, Li C, Li C, Li F, Li L, Li M, Li X, Li Y, Li ZT, Liang J, Lin Y, Liu C, Liu D, Liu F, Liu J, Liu T, Liu T, Liu X, Liu Y, Liu B, Liu M, Lou W, Luan Y, Luo Y, Lv H, Ma T, Mai Z, Mo J, Niu D, Pan Z, Qi H, Shi Z, Song C, Sun F, Sun Y, Tian S, Wan X, Wang G, Wang H, Wang H, Wang H, Wang J, Wang J, Wang K, Wang L, Wang SK, Wang X, Wang Y, Xiao Z, Xing H, Xu Y, Yan SY, Yang L, Yang S, Yang Y, Yao X, Yousuf S, Yu H, Lei Y, Yuan Z, Zeng M, Zhang C, Zhang C, Zhang H, Zhang J, Zhang N, Zhang T, Zhang YB, Zhang Y, Zhang Z, Zhou M, Zhou Y, Zhu C, Zhu L, Zhu Y, Zhu Z, Zou H, Zuo A, Dong W, Wen T, Chen S, Li G, Gao Y, Liu YX

Open source

DOI
10.1002/imt2.70001
Published
2025 Feb
Container
iMeta
Publisher
Not recorded
Open access
yes

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BibTeX

@article{allodium:10.1002/imt2.70001,
  title = {EasyMetagenome: A user-friendly and flexible pipeline for shotgun metagenomic analysis in microbiome research.},
  author = {Bai D and Chen T and Xun J and Ma C and Luo H and Yang H and Cao C and Cao X and Cui J and Deng YP and Deng Z and Dong W and Dong W and Du J and Fang Q and Fang W and Fang Y and Fu F and Fu M and Fu YT and Gao H and Ge J and Gong Q and Gu L and Guo P and Guo Y and Hai T and Liu H and He J and He ZY and Hou H and Huang C and Ji S and Jiang C and Jiang GL and Jiang L and Jin LN and Kan Y and Kang D and Kou J and Lam KL and Li C and Li C and Li F and Li L and Li M and Li X and Li Y and Li ZT and Liang J and Lin Y and Liu C and Liu D and Liu F and Liu J and Liu T and Liu T and Liu X and Liu Y and Liu B and Liu M and Lou W and Luan Y and Luo Y and Lv H and Ma T and Mai Z and Mo J and Niu D and Pan Z and Qi H and Shi Z and Song C and Sun F and Sun Y and Tian S and Wan X and Wang G and Wang H and Wang H and Wang H and Wang J and Wang J and Wang K and Wang L and Wang SK and Wang X and Wang Y and Xiao Z and Xing H and Xu Y and Yan SY and Yang L and Yang S and Yang Y and Yao X and Yousuf S and Yu H and Lei Y and Yuan Z and Zeng M and Zhang C and Zhang C and Zhang H and Zhang J and Zhang N and Zhang T and Zhang YB and Zhang Y and Zhang Z and Zhou M and Zhou Y and Zhu C and Zhu L and Zhu Y and Zhu Z and Zou H and Zuo A and Dong W and Wen T and Chen S and Li G and Gao Y and Liu YX},
  year = {2025},
  journal = {iMeta},
  doi = {10.1002/imt2.70001},
  url = {https://doi.org/10.1002/imt2.70001}
}

RIS

TY  - JOUR
TI  - EasyMetagenome: A user-friendly and flexible pipeline for shotgun metagenomic analysis in microbiome research.
AU  - Bai D
AU  - Chen T
AU  - Xun J
AU  - Ma C
AU  - Luo H
AU  - Yang H
AU  - Cao C
AU  - Cao X
AU  - Cui J
AU  - Deng YP
AU  - Deng Z
AU  - Dong W
AU  - Dong W
AU  - Du J
AU  - Fang Q
AU  - Fang W
AU  - Fang Y
AU  - Fu F
AU  - Fu M
AU  - Fu YT
AU  - Gao H
AU  - Ge J
AU  - Gong Q
AU  - Gu L
AU  - Guo P
AU  - Guo Y
AU  - Hai T
AU  - Liu H
AU  - He J
AU  - He ZY
AU  - Hou H
AU  - Huang C
AU  - Ji S
AU  - Jiang C
AU  - Jiang GL
AU  - Jiang L
AU  - Jin LN
AU  - Kan Y
AU  - Kang D
AU  - Kou J
AU  - Lam KL
AU  - Li C
AU  - Li C
AU  - Li F
AU  - Li L
AU  - Li M
AU  - Li X
AU  - Li Y
AU  - Li ZT
AU  - Liang J
AU  - Lin Y
AU  - Liu C
AU  - Liu D
AU  - Liu F
AU  - Liu J
AU  - Liu T
AU  - Liu T
AU  - Liu X
AU  - Liu Y
AU  - Liu B
AU  - Liu M
AU  - Lou W
AU  - Luan Y
AU  - Luo Y
AU  - Lv H
AU  - Ma T
AU  - Mai Z
AU  - Mo J
AU  - Niu D
AU  - Pan Z
AU  - Qi H
AU  - Shi Z
AU  - Song C
AU  - Sun F
AU  - Sun Y
AU  - Tian S
AU  - Wan X
AU  - Wang G
AU  - Wang H
AU  - Wang H
AU  - Wang H
AU  - Wang J
AU  - Wang J
AU  - Wang K
AU  - Wang L
AU  - Wang SK
AU  - Wang X
AU  - Wang Y
AU  - Xiao Z
AU  - Xing H
AU  - Xu Y
AU  - Yan SY
AU  - Yang L
AU  - Yang S
AU  - Yang Y
AU  - Yao X
AU  - Yousuf S
AU  - Yu H
AU  - Lei Y
AU  - Yuan Z
AU  - Zeng M
AU  - Zhang C
AU  - Zhang C
AU  - Zhang H
AU  - Zhang J
AU  - Zhang N
AU  - Zhang T
AU  - Zhang YB
AU  - Zhang Y
AU  - Zhang Z
AU  - Zhou M
AU  - Zhou Y
AU  - Zhu C
AU  - Zhu L
AU  - Zhu Y
AU  - Zhu Z
AU  - Zou H
AU  - Zuo A
AU  - Dong W
AU  - Wen T
AU  - Chen S
AU  - Li G
AU  - Gao Y
AU  - Liu YX
PY  - 2025
JO  - iMeta
DO  - 10.1002/imt2.70001
UR  - https://doi.org/10.1002/imt2.70001
ER  -

APA

D, B., T, C., J, X., C, M., H, L., H, Y., C, C., X, C., J, C., YP, D., Z, D., W, D., W, D., J, D., Q, F., W, F., Y, F., F, F., M, F., YT, F., H, G., J, G., Q, G., L, G., P, G., Y, G., T, H., H, L., J, H., ZY, H., H, H., C, H., S, J., C, J., GL, J., L, J., LN, J., Y, K., D, K., J, K., KL, L., C, L., C, L., F, L., L, L., M, L., X, L., Y, L., ZT, L., J, L., Y, L., C, L., D, L., F, L., J, L., T, L., T, L., X, L., Y, L., B, L., M, L., W, L., Y, L., Y, L., H, L., T, M., Z, M., J, M., D, N., Z, P., H, Q., Z, S., C, S., F, S., Y, S., S, T., X, W., G, W., H, W., H, W., H, W., J, W., J, W., K, W., L, W., SK, W., X, W., Y, W., Z, X., H, X., Y, X., SY, Y., L, Y., S, Y., Y, Y., X, Y., S, Y., H, Y., Y, L., Z, Y., M, Z., C, Z., C, Z., H, Z., J, Z., N, Z., T, Z., YB, Z., Y, Z., Z, Z., M, Z., Y, Z., C, Z., L, Z., Y, Z., Z, Z., H, Z., A, Z., W, D., T, W., S, C., G, L., Y, G., & YX, L. (2025). EasyMetagenome: A user-friendly and flexible pipeline for shotgun metagenomic analysis in microbiome research.. iMeta. https://doi.org/10.1002/imt2.70001

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