WSI-Babel-Shark: A modular pipeline for robust metadata extraction from heterogeneous whole slide image labels in digital pathology

Shahram Aliyari, Maximilian Legnar, Christoph Blattgerste, Ayk Jessen, Balamurugan Thirukonda Subramanian Balakrishnan, Nils Englert, Philip S.J. Kaib, Mark Sementsov, Constantin Schwab, Cleo-Aron Weis

Open source

DOI
10.1016/j.jpi.2026.100722
Published
2026-11
Container
Journal of Pathology Informatics
Publisher
Elsevier BV
Open access
unknown

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BibTeX

@article{allodium:10.1016/j.jpi.2026.100722,
  title = {WSI-Babel-Shark: A modular pipeline for robust metadata extraction from heterogeneous whole slide image labels in digital pathology},
  author = {Shahram Aliyari and Maximilian Legnar and Christoph Blattgerste and Ayk Jessen and Balamurugan Thirukonda Subramanian Balakrishnan and Nils Englert and Philip S.J. Kaib and Mark Sementsov and Constantin Schwab and Cleo-Aron Weis},
  year = {2026},
  journal = {Journal of Pathology Informatics},
  doi = {10.1016/j.jpi.2026.100722},
  url = {https://doi.org/10.1016/j.jpi.2026.100722}
}

RIS

TY  - JOUR
TI  - WSI-Babel-Shark: A modular pipeline for robust metadata extraction from heterogeneous whole slide image labels in digital pathology
AU  - Shahram Aliyari
AU  - Maximilian Legnar
AU  - Christoph Blattgerste
AU  - Ayk Jessen
AU  - Balamurugan Thirukonda Subramanian Balakrishnan
AU  - Nils Englert
AU  - Philip S.J. Kaib
AU  - Mark Sementsov
AU  - Constantin Schwab
AU  - Cleo-Aron Weis
PY  - 2026
JO  - Journal of Pathology Informatics
DO  - 10.1016/j.jpi.2026.100722
UR  - https://doi.org/10.1016/j.jpi.2026.100722
ER  - 

APA

Aliyari, S., Legnar, M., Blattgerste, C., Jessen, A., Balakrishnan, B. T. S., Englert, N., Kaib, P. S., Sementsov, M., Schwab, C., & Weis, C. (2026). WSI-Babel-Shark: A modular pipeline for robust metadata extraction from heterogeneous whole slide image labels in digital pathology. Journal of Pathology Informatics. https://doi.org/10.1016/j.jpi.2026.100722

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