Long-read deep sequencing reveals high rates of multilineage transmission and rapid viral population changes in acute HIV infection.

Mullins JI, Deng W, Giorgi EE, Magaret CA, Rolland M, Bhattacharya T, Westfall DH, Yssel AEJ, Bumgarner RE, Murrell B, Ndung'u T, Robb ML, Rossenkhan R, Edlefsen PT, Dong KL, Chen L, Gwashu-Nyangiwe A, Zhao H, Thebus R, Ndabambi N, Galvao B, Sawe F, Nitayaphan S, York T, Matten D, Murrell H, Pankow AP, Juraska M, Ludwig J, Hural J, Cohen MS, Corey L, McElrath MJ, Gilbert PB, Williamson C

Open source

DOI: 10.1038/s41467-026-73496-0
Published: 2026 May 25
Container: Nature communications
Publisher: Not recorded
Open access: yes

Credibility signals

limited evidence Score 45/100 under policy 1.0.0. This is a metadata assessment, not a judgment of the paper's conclusions.

Show all credibility signals

cautionDOI registered: No matching Crossref record was present in this response. Source: Crossref; license: CC0 metadata
cautionDOI resolves: No matching Crossref record was present in this response. Source: Crossref; license: CC0 metadata
not scoredDirectory of Open Access Journals: No matching DOAJ record was present in this response. No allow-list match; this is not evidence of low credibility. Source: DOAJ; license: CC0
not scoredMEDLINE indexed: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredOpenAlex core source: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredKnown publisher allow-list: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredROR affiliation: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredRetraction Watch retraction: No retraction notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
not scoredRetraction Watch expression of concern: No expression of concern notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
not scoredRetraction Watch correction: No correction notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
not scoredRetraction Watch reinstatement: No reinstatement notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
supportingOpen access status: Normalized open-access status: open. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer
not scoredPublication license: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredPublication version: A publication version was supplied but is not scored. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer
cautionMetadata completeness: 5 of 6 scored descriptive metadata groups are present; missing fields increase uncertainty. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer

Cite this work

BibTeX

@article{allodium:10.1038/s41467-026-73496-0,
  title = {Long-read deep sequencing reveals high rates of multilineage transmission and rapid viral population changes in acute HIV infection.},
  author = {Mullins JI and Deng W and Giorgi EE and Magaret CA and Rolland M and Bhattacharya T and Westfall DH and Yssel AEJ and Bumgarner RE and Murrell B and Ndung'u T and Robb ML and Rossenkhan R and Edlefsen PT and Dong KL and Chen L and Gwashu-Nyangiwe A and Zhao H and Thebus R and Ndabambi N and Galvao B and Sawe F and Nitayaphan S and York T and Matten D and Murrell H and Pankow AP and Juraska M and Ludwig J and Hural J and Cohen MS and Corey L and McElrath MJ and Gilbert PB and Williamson C},
  year = {2026},
  journal = {Nature communications},
  doi = {10.1038/s41467-026-73496-0},
  url = {https://doi.org/10.1038/s41467-026-73496-0}
}

RIS

TY  - JOUR
TI  - Long-read deep sequencing reveals high rates of multilineage transmission and rapid viral population changes in acute HIV infection.
AU  - Mullins JI
AU  - Deng W
AU  - Giorgi EE
AU  - Magaret CA
AU  - Rolland M
AU  - Bhattacharya T
AU  - Westfall DH
AU  - Yssel AEJ
AU  - Bumgarner RE
AU  - Murrell B
AU  - Ndung'u T
AU  - Robb ML
AU  - Rossenkhan R
AU  - Edlefsen PT
AU  - Dong KL
AU  - Chen L
AU  - Gwashu-Nyangiwe A
AU  - Zhao H
AU  - Thebus R
AU  - Ndabambi N
AU  - Galvao B
AU  - Sawe F
AU  - Nitayaphan S
AU  - York T
AU  - Matten D
AU  - Murrell H
AU  - Pankow AP
AU  - Juraska M
AU  - Ludwig J
AU  - Hural J
AU  - Cohen MS
AU  - Corey L
AU  - McElrath MJ
AU  - Gilbert PB
AU  - Williamson C
PY  - 2026
JO  - Nature communications
DO  - 10.1038/s41467-026-73496-0
UR  - https://doi.org/10.1038/s41467-026-73496-0
ER  -

APA

JI, M., W, D., EE, G., CA, M., M, R., T, B., DH, W., AEJ, Y., RE, B., B, M., T, N., ML, R., R, R., PT, E., KL, D., L, C., A, G., H, Z., R, T., N, N., B, G., F, S., S, N., T, Y., D, M., H, M., AP, P., M, J., J, L., J, H., MS, C., L, C., MJ, M., PB, G., & C, W. (2026). Long-read deep sequencing reveals high rates of multilineage transmission and rapid viral population changes in acute HIV infection.. Nature communications. https://doi.org/10.1038/s41467-026-73496-0

Source records

pubmed · retrieved 2026-09-26T20:22:04.348Z