Recovering anaerobic bacterial genomes in saliva, tumour and blood whole genome sequencing data from patients with prostate cancer

A. Gihawi, A. Bampalis, S. Subramanian, Unknown, Noora Al-Muftah, Esther Baena, Daniel Barrowdale, Lucy M. Barton, Rajbir N. Batra, Justin Bedő, Alain Bergeron, Alejandro Berlin, Michael Borre, Paul Boutros, G. Steven Bova, Daniel S. Brewer, Robert G. Bristow, Mark N. Brook, Benedikt Brors, Dan Burns, Adam Butler, Bethany K. Campbell, Géraldine Cancel-Tassin, Ryan Carelli, Kevin CL. Cheng, Melissa Cheung, Ken Chow, Michael J. Clarkson, Marek Cmero, Colin Collins, Colin S. Cooper, Niall M. Corcoran, Angelo Corso Faini, Tony Costello, Olivier Cussenot, Nening Dennis, Harveer Dev, Wikum Dinalankara, Ruining Dong, Philip Dundee, Ros A. Eeles, Andrew Erickson, Emre Esentürk, Fabian Falkenbach, Giuseppe N. Fanelli, Francesco Favero, Breon Feran, Angel Fernandez-Sanroman, Lars Feuerbach, Chris Foster, Yves Fradet, Michael Fraser, Yunfan Fu, Kira Furlano, Peter Georgeson, Clarissa Gerhauser, Kazzem Gheybi, Abraham Gihawi, Etsehiwot G. Girma, Vincent J. Gnanapragasam, Markus Graefen, Corinna Grima, Andreas J. Gruber, Valleriia Haberland, Grace A. Hall, Freddie Hamdy, Anis Hamid, Vanessa M. Hayes, Xiaotong He, Housheng Hansen He, Jessica Heilmann, Barbara Hernando, Vivien Holmes, Chen Hong, Matthew KH. Hong, Christopher M. Hovens, William J. Hutchison, Eddie Luidy Imada, G. Maria Jakobsdottir, Weerachai Jaratlerdsiri, Jue Jiang, Chol-hee Jung, Thomas Keane, Michael Kerger, Giselle Kerry, Francesca Khani, Daria Kiriy, Jan Korbel, Zsofia Kote-Jarai, Natalie Kurganovs, Radoslaw Lach, Alastair Lamb, Philippe Lamy, Gregory Leeman, Wing-Kit Leung, Beng Lim, Massimo Loda, Yong-Jie J. Lu, Pavlo Lutsik, Andy G. Lynch, Geoff Macintyre, Stefano Mangiola, Luigi Marchionni, Charlie E. Massie, Patrick McCoy, Arfa Mehmood, Nana Mensah, Ian Mills, Toby Milne-Clark, Ramyar Molania, Anne Nguyen, Sam Norden, Pier Vitale Nuzzo, Matti Nykter, Samson Olofinsae, Andre V. Olsen, Mohamed Omar, Simon Pacey, Hubert Pakula, Yidan Pan, Anthony T. Papenfuss, Daniel J. Park, Filippo Pederzoli, Diogo Pellegrina, Jocelyn Penington, Justin S. Peters, Parmit M. Phal, Parsa Pirhady, Christoph Plass, Bernard Pope, Lucio R. Queiroz, Keiran Raine, Tobias Rausch, Jüri Reimand, Brian Robinson, Silvia Rodrigues, Ronnie Rodrigues Pereira, Alan F. Rubin, Andrew Ryan, Atef Sahli, Chris Sander, Aravind Sankar, Guido Sauter, Michael Scherer, Thorsten Schlomm, Balthasar C. Schlotmann, Ronald Simon, Pamela X. Y. Soh, Karina D. Sørensen, Ryan Stuchbery, Holger Sültmann, Avigail Taylor, Pierre Tennstedt, Gabriel Tulcan, Sebastian Uhrig, Benedicte P. Ulhoi, Jennifer Ureta, Theo Van Der Kwast, Peter Van Loo, Clare Verrill, Tapio Visakorpi, Lena Voith von Voithenberg, Matthew Wakefield, Anne Warren, David C. Wedge, Joachim Weischenfeldt, Christopher Wirth, Dan J. Woodcock, Yaobo Xu, Takafumi N. Yamaguchi, Claudio Zanettini, Jingjing Zhang, Aleksandra S. Ziuboniewicz, G. S. Bova, A. Butler, N. M. Corcoran, F. Favero, V. Gnanapragasam, A. Hamid, C. Jung, Z. Kote Jarai, G. Leeman, M. Loda, J. Reimand, A. Sahli, T. Schlomm, T. N. Yamaguchi, J. Weischenfelft, C. Hovens, B. Pope, R. Bristow, M. N. Brook, K. C. L. Cheng, E. G. Girma, A. J. Gruber, H. H. He, E. L. Imada, G. M. Jakobsdottir, F. Khani, P. Lutsik, L. Marchionni, R. Molania, A. T. Papenfuss, D. Pellegrina, L. R. Queiroz, T. Rausch, B. Robinson, C. Zanettini, K. D. Sørensen, P. Lamy, G. Cancel-Tassin, O. Cussenot, R. A. Eeles, N. Annels, V. M. Hayes, R. Hurst, C. S. Cooper, D. S. Brewer

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DOI
10.1038/s41522-026-01140-2
Published
2026-10-20
Container
npj Biofilms and Microbiomes
Publisher
Springer Science and Business Media LLC
Open access
unknown

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BibTeX

@article{allodium:10.1038/s41522-026-01140-2,
  title = {Recovering anaerobic bacterial genomes in saliva, tumour and blood whole genome sequencing data from patients with prostate cancer},
  author = {A. Gihawi and A. Bampalis and S. Subramanian and Unknown and Noora Al-Muftah and Esther Baena and Daniel Barrowdale and Lucy M. Barton and Rajbir N. Batra and Justin Bedő and Alain Bergeron and Alejandro Berlin and Michael Borre and Paul Boutros and G. Steven Bova and Daniel S. Brewer and Robert G. Bristow and Mark N. Brook and Benedikt Brors and Dan Burns and Adam Butler and Bethany K. Campbell and Géraldine Cancel-Tassin and Ryan Carelli and Kevin CL. Cheng and Melissa Cheung and Ken Chow and Michael J. Clarkson and Marek Cmero and Colin Collins and Colin S. Cooper and Niall M. Corcoran and Angelo Corso Faini and Tony Costello and Olivier Cussenot and Nening Dennis and Harveer Dev and Wikum Dinalankara and Ruining Dong and Philip Dundee and Ros A. Eeles and Andrew Erickson and Emre Esentürk and Fabian Falkenbach and Giuseppe N. Fanelli and Francesco Favero and Breon Feran and Angel Fernandez-Sanroman and Lars Feuerbach and Chris Foster and Yves Fradet and Michael Fraser and Yunfan Fu and Kira Furlano and Peter Georgeson and Clarissa Gerhauser and Kazzem Gheybi and Abraham Gihawi and Etsehiwot G. Girma and Vincent J. Gnanapragasam and Markus Graefen and Corinna Grima and Andreas J. Gruber and Valleriia Haberland and Grace A. Hall and Freddie Hamdy and Anis Hamid and Vanessa M. Hayes and Xiaotong He and Housheng Hansen He and Jessica Heilmann and Barbara Hernando and Vivien Holmes and Chen Hong and Matthew KH. Hong and Christopher M. Hovens and William J. Hutchison and Eddie Luidy Imada and G. Maria Jakobsdottir and Weerachai Jaratlerdsiri and Jue Jiang and Chol-hee Jung and Thomas Keane and Michael Kerger and Giselle Kerry and Francesca Khani and Daria Kiriy and Jan Korbel and Zsofia Kote-Jarai and Natalie Kurganovs and Radoslaw Lach and Alastair Lamb and Philippe Lamy and Gregory Leeman and Wing-Kit Leung and Beng Lim and Massimo Loda and Yong-Jie J. Lu and Pavlo Lutsik and Andy G. Lynch and Geoff Macintyre and Stefano Mangiola and Luigi Marchionni and Charlie E. Massie and Patrick McCoy and Arfa Mehmood and Nana Mensah and Ian Mills and Toby Milne-Clark and Ramyar Molania and Anne Nguyen and Sam Norden and Pier Vitale Nuzzo and Matti Nykter and Samson Olofinsae and Andre V. Olsen and Mohamed Omar and Simon Pacey and Hubert Pakula and Yidan Pan and Anthony T. Papenfuss and Daniel J. Park and Filippo Pederzoli and Diogo Pellegrina and Jocelyn Penington and Justin S. Peters and Parmit M. Phal and Parsa Pirhady and Christoph Plass and Bernard Pope and Lucio R. Queiroz and Keiran Raine and Tobias Rausch and Jüri Reimand and Brian Robinson and Silvia Rodrigues and Ronnie Rodrigues Pereira and Alan F. Rubin and Andrew Ryan and Atef Sahli and Chris Sander and Aravind Sankar and Guido Sauter and Michael Scherer and Thorsten Schlomm and Balthasar C. Schlotmann and Ronald Simon and Pamela X. Y. Soh and Karina D. Sørensen and Ryan Stuchbery and Holger Sültmann and Avigail Taylor and Pierre Tennstedt and Gabriel Tulcan and Sebastian Uhrig and Benedicte P. Ulhoi and Jennifer Ureta and Theo Van Der Kwast and Peter Van Loo and Clare Verrill and Tapio Visakorpi and Lena Voith von Voithenberg and Matthew Wakefield and Anne Warren and David C. Wedge and Joachim Weischenfeldt and Christopher Wirth and Dan J. Woodcock and Yaobo Xu and Takafumi N. Yamaguchi and Claudio Zanettini and Jingjing Zhang and Aleksandra S. Ziuboniewicz and G. S. Bova and A. Butler and N. M. Corcoran and F. Favero and V. Gnanapragasam and A. Hamid and C. Jung and Z. Kote Jarai and G. Leeman and M. Loda and J. Reimand and A. Sahli and T. Schlomm and T. N. Yamaguchi and J. Weischenfelft and C. Hovens and B. Pope and R. Bristow and M. N. Brook and K. C. L. Cheng and E. G. Girma and A. J. Gruber and H. H. He and E. L. Imada and G. M. Jakobsdottir and F. Khani and P. Lutsik and L. Marchionni and R. Molania and A. T. Papenfuss and D. Pellegrina and L. R. Queiroz and T. Rausch and B. Robinson and C. Zanettini and K. D. Sørensen and P. Lamy and G. Cancel-Tassin and O. Cussenot and R. A. Eeles and N. Annels and V. M. Hayes and R. Hurst and C. S. Cooper and D. S. Brewer},
  year = {2026},
  journal = {npj Biofilms and Microbiomes},
  doi = {10.1038/s41522-026-01140-2},
  url = {https://doi.org/10.1038/s41522-026-01140-2}
}

RIS

TY  - JOUR
TI  - Recovering anaerobic bacterial genomes in saliva, tumour and blood whole genome sequencing data from patients with prostate cancer
AU  - A. Gihawi
AU  - A. Bampalis
AU  - S. Subramanian
AU  - Unknown
AU  - Noora Al-Muftah
AU  - Esther Baena
AU  - Daniel Barrowdale
AU  - Lucy M. Barton
AU  - Rajbir N. Batra
AU  - Justin Bedő
AU  - Alain Bergeron
AU  - Alejandro Berlin
AU  - Michael Borre
AU  - Paul Boutros
AU  - G. Steven Bova
AU  - Daniel S. Brewer
AU  - Robert G. Bristow
AU  - Mark N. Brook
AU  - Benedikt Brors
AU  - Dan Burns
AU  - Adam Butler
AU  - Bethany K. Campbell
AU  - Géraldine Cancel-Tassin
AU  - Ryan Carelli
AU  - Kevin CL. Cheng
AU  - Melissa Cheung
AU  - Ken Chow
AU  - Michael J. Clarkson
AU  - Marek Cmero
AU  - Colin Collins
AU  - Colin S. Cooper
AU  - Niall M. Corcoran
AU  - Angelo Corso Faini
AU  - Tony Costello
AU  - Olivier Cussenot
AU  - Nening Dennis
AU  - Harveer Dev
AU  - Wikum Dinalankara
AU  - Ruining Dong
AU  - Philip Dundee
AU  - Ros A. Eeles
AU  - Andrew Erickson
AU  - Emre Esentürk
AU  - Fabian Falkenbach
AU  - Giuseppe N. Fanelli
AU  - Francesco Favero
AU  - Breon Feran
AU  - Angel Fernandez-Sanroman
AU  - Lars Feuerbach
AU  - Chris Foster
AU  - Yves Fradet
AU  - Michael Fraser
AU  - Yunfan Fu
AU  - Kira Furlano
AU  - Peter Georgeson
AU  - Clarissa Gerhauser
AU  - Kazzem Gheybi
AU  - Abraham Gihawi
AU  - Etsehiwot G. Girma
AU  - Vincent J. Gnanapragasam
AU  - Markus Graefen
AU  - Corinna Grima
AU  - Andreas J. Gruber
AU  - Valleriia Haberland
AU  - Grace A. Hall
AU  - Freddie Hamdy
AU  - Anis Hamid
AU  - Vanessa M. Hayes
AU  - Xiaotong He
AU  - Housheng Hansen He
AU  - Jessica Heilmann
AU  - Barbara Hernando
AU  - Vivien Holmes
AU  - Chen Hong
AU  - Matthew KH. Hong
AU  - Christopher M. Hovens
AU  - William J. Hutchison
AU  - Eddie Luidy Imada
AU  - G. Maria Jakobsdottir
AU  - Weerachai Jaratlerdsiri
AU  - Jue Jiang
AU  - Chol-hee Jung
AU  - Thomas Keane
AU  - Michael Kerger
AU  - Giselle Kerry
AU  - Francesca Khani
AU  - Daria Kiriy
AU  - Jan Korbel
AU  - Zsofia Kote-Jarai
AU  - Natalie Kurganovs
AU  - Radoslaw Lach
AU  - Alastair Lamb
AU  - Philippe Lamy
AU  - Gregory Leeman
AU  - Wing-Kit Leung
AU  - Beng Lim
AU  - Massimo Loda
AU  - Yong-Jie J. Lu
AU  - Pavlo Lutsik
AU  - Andy G. Lynch
AU  - Geoff Macintyre
AU  - Stefano Mangiola
AU  - Luigi Marchionni
AU  - Charlie E. Massie
AU  - Patrick McCoy
AU  - Arfa Mehmood
AU  - Nana Mensah
AU  - Ian Mills
AU  - Toby Milne-Clark
AU  - Ramyar Molania
AU  - Anne Nguyen
AU  - Sam Norden
AU  - Pier Vitale Nuzzo
AU  - Matti Nykter
AU  - Samson Olofinsae
AU  - Andre V. Olsen
AU  - Mohamed Omar
AU  - Simon Pacey
AU  - Hubert Pakula
AU  - Yidan Pan
AU  - Anthony T. Papenfuss
AU  - Daniel J. Park
AU  - Filippo Pederzoli
AU  - Diogo Pellegrina
AU  - Jocelyn Penington
AU  - Justin S. Peters
AU  - Parmit M. Phal
AU  - Parsa Pirhady
AU  - Christoph Plass
AU  - Bernard Pope
AU  - Lucio R. Queiroz
AU  - Keiran Raine
AU  - Tobias Rausch
AU  - Jüri Reimand
AU  - Brian Robinson
AU  - Silvia Rodrigues
AU  - Ronnie Rodrigues Pereira
AU  - Alan F. Rubin
AU  - Andrew Ryan
AU  - Atef Sahli
AU  - Chris Sander
AU  - Aravind Sankar
AU  - Guido Sauter
AU  - Michael Scherer
AU  - Thorsten Schlomm
AU  - Balthasar C. Schlotmann
AU  - Ronald Simon
AU  - Pamela X. Y. Soh
AU  - Karina D. Sørensen
AU  - Ryan Stuchbery
AU  - Holger Sültmann
AU  - Avigail Taylor
AU  - Pierre Tennstedt
AU  - Gabriel Tulcan
AU  - Sebastian Uhrig
AU  - Benedicte P. Ulhoi
AU  - Jennifer Ureta
AU  - Theo Van Der Kwast
AU  - Peter Van Loo
AU  - Clare Verrill
AU  - Tapio Visakorpi
AU  - Lena Voith von Voithenberg
AU  - Matthew Wakefield
AU  - Anne Warren
AU  - David C. Wedge
AU  - Joachim Weischenfeldt
AU  - Christopher Wirth
AU  - Dan J. Woodcock
AU  - Yaobo Xu
AU  - Takafumi N. Yamaguchi
AU  - Claudio Zanettini
AU  - Jingjing Zhang
AU  - Aleksandra S. Ziuboniewicz
AU  - G. S. Bova
AU  - A. Butler
AU  - N. M. Corcoran
AU  - F. Favero
AU  - V. Gnanapragasam
AU  - A. Hamid
AU  - C. Jung
AU  - Z. Kote Jarai
AU  - G. Leeman
AU  - M. Loda
AU  - J. Reimand
AU  - A. Sahli
AU  - T. Schlomm
AU  - T. N. Yamaguchi
AU  - J. Weischenfelft
AU  - C. Hovens
AU  - B. Pope
AU  - R. Bristow
AU  - M. N. Brook
AU  - K. C. L. Cheng
AU  - E. G. Girma
AU  - A. J. Gruber
AU  - H. H. He
AU  - E. L. Imada
AU  - G. M. Jakobsdottir
AU  - F. Khani
AU  - P. Lutsik
AU  - L. Marchionni
AU  - R. Molania
AU  - A. T. Papenfuss
AU  - D. Pellegrina
AU  - L. R. Queiroz
AU  - T. Rausch
AU  - B. Robinson
AU  - C. Zanettini
AU  - K. D. Sørensen
AU  - P. Lamy
AU  - G. Cancel-Tassin
AU  - O. Cussenot
AU  - R. A. Eeles
AU  - N. Annels
AU  - V. M. Hayes
AU  - R. Hurst
AU  - C. S. Cooper
AU  - D. S. Brewer
PY  - 2026
JO  - npj Biofilms and Microbiomes
DO  - 10.1038/s41522-026-01140-2
UR  - https://doi.org/10.1038/s41522-026-01140-2
ER  -

APA

Gihawi, A., Bampalis, A., Subramanian, S., Unknown, Al-Muftah, N., Baena, E., Barrowdale, D., Barton, L. M., Batra, R. N., Bedő, J., Bergeron, A., Berlin, A., Borre, M., Boutros, P., Bova, G. S., Brewer, D. S., Bristow, R. G., Brook, M. N., Brors, B., Burns, D., Butler, A., Campbell, B. K., Cancel-Tassin, G., Carelli, R., Cheng, K. C., Cheung, M., Chow, K., Clarkson, M. J., Cmero, M., Collins, C., Cooper, C. S., Corcoran, N. M., Faini, A. C., Costello, T., Cussenot, O., Dennis, N., Dev, H., Dinalankara, W., Dong, R., Dundee, P., Eeles, R. A., Erickson, A., Esentürk, E., Falkenbach, F., Fanelli, G. N., Favero, F., Feran, B., Fernandez-Sanroman, A., Feuerbach, L., Foster, C., Fradet, Y., Fraser, M., Fu, Y., Furlano, K., Georgeson, P., Gerhauser, C., Gheybi, K., Gihawi, A., Girma, E. G., Gnanapragasam, V. J., Graefen, M., Grima, C., Gruber, A. J., Haberland, V., Hall, G. A., Hamdy, F., Hamid, A., Hayes, V. M., He, X., He, H. H., Heilmann, J., Hernando, B., Holmes, V., Hong, C., Hong, M. K., Hovens, C. M., Hutchison, W. J., Imada, E. L., Jakobsdottir, G. M., Jaratlerdsiri, W., Jiang, J., Jung, C., Keane, T., Kerger, M., Kerry, G., Khani, F., Kiriy, D., Korbel, J., Kote-Jarai, Z., Kurganovs, N., Lach, R., Lamb, A., Lamy, P., Leeman, G., Leung, W., Lim, B., Loda, M., Lu, Y. J., Lutsik, P., Lynch, A. G., Macintyre, G., Mangiola, S., Marchionni, L., Massie, C. E., McCoy, P., Mehmood, A., Mensah, N., Mills, I., Milne-Clark, T., Molania, R., Nguyen, A., Norden, S., Nuzzo, P. V., Nykter, M., Olofinsae, S., Olsen, A. V., Omar, M., Pacey, S., Pakula, H., Pan, Y., Papenfuss, A. T., Park, D. J., Pederzoli, F., Pellegrina, D., Penington, J., Peters, J. S., Phal, P. M., Pirhady, P., Plass, C., Pope, B., Queiroz, L. R., Raine, K., Rausch, T., Reimand, J., Robinson, B., Rodrigues, S., Pereira, R. R., Rubin, A. F., Ryan, A., Sahli, A., Sander, C., Sankar, A., Sauter, G., Scherer, M., Schlomm, T., Schlotmann, B. C., Simon, R., Soh, P. X. Y., Sørensen, K. D., Stuchbery, R., Sültmann, H., Taylor, A., Tennstedt, P., Tulcan, G., Uhrig, S., Ulhoi, B. P., Ureta, J., Kwast, T. V. D., Loo, P. V., Verrill, C., Visakorpi, T., Voithenberg, L. V. V., Wakefield, M., Warren, A., Wedge, D. C., Weischenfeldt, J., Wirth, C., Woodcock, D. J., Xu, Y., Yamaguchi, T. N., Zanettini, C., Zhang, J., Ziuboniewicz, A. S., Bova, G. S., Butler, A., Corcoran, N. M., Favero, F., Gnanapragasam, V., Hamid, A., Jung, C., Jarai, Z. K., Leeman, G., Loda, M., Reimand, J., Sahli, A., Schlomm, T., Yamaguchi, T. N., Weischenfelft, J., Hovens, C., Pope, B., Bristow, R., Brook, M. N., Cheng, K. C. L., Girma, E. G., Gruber, A. J., He, H. H., Imada, E. L., Jakobsdottir, G. M., Khani, F., Lutsik, P., Marchionni, L., Molania, R., Papenfuss, A. T., Pellegrina, D., Queiroz, L. R., Rausch, T., Robinson, B., Zanettini, C., Sørensen, K. D., Lamy, P., Cancel-Tassin, G., Cussenot, O., Eeles, R. A., Annels, N., Hayes, V. M., Hurst, R., Cooper, C. S., & Brewer, D. S. (2026). Recovering anaerobic bacterial genomes in saliva, tumour and blood whole genome sequencing data from patients with prostate cancer. npj Biofilms and Microbiomes. https://doi.org/10.1038/s41522-026-01140-2

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