Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS 2nd, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson CHD, Willis AD, Xu ZZ, Zaneveld JR, Zhang Y, Zhu Q, Knight R, Caporaso JG

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DOI: 10.1038/s41587-019-0209-9
Published: 2019 Aug
Container: Nature biotechnology
Publisher: Not recorded
Open access: yes

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Cite this work

BibTeX

@article{allodium:10.1038/s41587-019-0209-9,
  title = {Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.},
  author = {Bolyen E and Rideout JR and Dillon MR and Bokulich NA and Abnet CC and Al-Ghalith GA and Alexander H and Alm EJ and Arumugam M and Asnicar F and Bai Y and Bisanz JE and Bittinger K and Brejnrod A and Brislawn CJ and Brown CT and Callahan BJ and Caraballo-Rodríguez AM and Chase J and Cope EK and Da Silva R and Diener C and Dorrestein PC and Douglas GM and Durall DM and Duvallet C and Edwardson CF and Ernst M and Estaki M and Fouquier J and Gauglitz JM and Gibbons SM and Gibson DL and Gonzalez A and Gorlick K and Guo J and Hillmann B and Holmes S and Holste H and Huttenhower C and Huttley GA and Janssen S and Jarmusch AK and Jiang L and Kaehler BD and Kang KB and Keefe CR and Keim P and Kelley ST and Knights D and Koester I and Kosciolek T and Kreps J and Langille MGI and Lee J and Ley R and Liu YX and Loftfield E and Lozupone C and Maher M and Marotz C and Martin BD and McDonald D and McIver LJ and Melnik AV and Metcalf JL and Morgan SC and Morton JT and Naimey AT and Navas-Molina JA and Nothias LF and Orchanian SB and Pearson T and Peoples SL and Petras D and Preuss ML and Pruesse E and Rasmussen LB and Rivers A and Robeson MS 2nd and Rosenthal P and Segata N and Shaffer M and Shiffer A and Sinha R and Song SJ and Spear JR and Swafford AD and Thompson LR and Torres PJ and Trinh P and Tripathi A and Turnbaugh PJ and Ul-Hasan S and van der Hooft JJJ and Vargas F and Vázquez-Baeza Y and Vogtmann E and von Hippel M and Walters W and Wan Y and Wang M and Warren J and Weber KC and Williamson CHD and Willis AD and Xu ZZ and Zaneveld JR and Zhang Y and Zhu Q and Knight R and Caporaso JG},
  year = {2019},
  journal = {Nature biotechnology},
  doi = {10.1038/s41587-019-0209-9},
  url = {https://doi.org/10.1038/s41587-019-0209-9}
}

RIS

TY  - JOUR
TI  - Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
AU  - Bolyen E
AU  - Rideout JR
AU  - Dillon MR
AU  - Bokulich NA
AU  - Abnet CC
AU  - Al-Ghalith GA
AU  - Alexander H
AU  - Alm EJ
AU  - Arumugam M
AU  - Asnicar F
AU  - Bai Y
AU  - Bisanz JE
AU  - Bittinger K
AU  - Brejnrod A
AU  - Brislawn CJ
AU  - Brown CT
AU  - Callahan BJ
AU  - Caraballo-Rodríguez AM
AU  - Chase J
AU  - Cope EK
AU  - Da Silva R
AU  - Diener C
AU  - Dorrestein PC
AU  - Douglas GM
AU  - Durall DM
AU  - Duvallet C
AU  - Edwardson CF
AU  - Ernst M
AU  - Estaki M
AU  - Fouquier J
AU  - Gauglitz JM
AU  - Gibbons SM
AU  - Gibson DL
AU  - Gonzalez A
AU  - Gorlick K
AU  - Guo J
AU  - Hillmann B
AU  - Holmes S
AU  - Holste H
AU  - Huttenhower C
AU  - Huttley GA
AU  - Janssen S
AU  - Jarmusch AK
AU  - Jiang L
AU  - Kaehler BD
AU  - Kang KB
AU  - Keefe CR
AU  - Keim P
AU  - Kelley ST
AU  - Knights D
AU  - Koester I
AU  - Kosciolek T
AU  - Kreps J
AU  - Langille MGI
AU  - Lee J
AU  - Ley R
AU  - Liu YX
AU  - Loftfield E
AU  - Lozupone C
AU  - Maher M
AU  - Marotz C
AU  - Martin BD
AU  - McDonald D
AU  - McIver LJ
AU  - Melnik AV
AU  - Metcalf JL
AU  - Morgan SC
AU  - Morton JT
AU  - Naimey AT
AU  - Navas-Molina JA
AU  - Nothias LF
AU  - Orchanian SB
AU  - Pearson T
AU  - Peoples SL
AU  - Petras D
AU  - Preuss ML
AU  - Pruesse E
AU  - Rasmussen LB
AU  - Rivers A
AU  - Robeson MS 2nd
AU  - Rosenthal P
AU  - Segata N
AU  - Shaffer M
AU  - Shiffer A
AU  - Sinha R
AU  - Song SJ
AU  - Spear JR
AU  - Swafford AD
AU  - Thompson LR
AU  - Torres PJ
AU  - Trinh P
AU  - Tripathi A
AU  - Turnbaugh PJ
AU  - Ul-Hasan S
AU  - van der Hooft JJJ
AU  - Vargas F
AU  - Vázquez-Baeza Y
AU  - Vogtmann E
AU  - von Hippel M
AU  - Walters W
AU  - Wan Y
AU  - Wang M
AU  - Warren J
AU  - Weber KC
AU  - Williamson CHD
AU  - Willis AD
AU  - Xu ZZ
AU  - Zaneveld JR
AU  - Zhang Y
AU  - Zhu Q
AU  - Knight R
AU  - Caporaso JG
PY  - 2019
JO  - Nature biotechnology
DO  - 10.1038/s41587-019-0209-9
UR  - https://doi.org/10.1038/s41587-019-0209-9
ER  -

APA

E, B., JR, R., MR, D., NA, B., CC, A., GA, A., H, A., EJ, A., M, A., F, A., Y, B., JE, B., K, B., A, B., CJ, B., CT, B., BJ, C., AM, C., J, C., EK, C., R, D. S., C, D., PC, D., GM, D., DM, D., C, D., CF, E., M, E., M, E., J, F., JM, G., SM, G., DL, G., A, G., K, G., J, G., B, H., S, H., H, H., C, H., GA, H., S, J., AK, J., L, J., BD, K., KB, K., CR, K., P, K., ST, K., D, K., I, K., T, K., J, K., MGI, L., J, L., R, L., YX, L., E, L., C, L., M, M., C, M., BD, M., D, M., LJ, M., AV, M., JL, M., SC, M., JT, M., AT, N., JA, N., LF, N., SB, O., T, P., SL, P., D, P., ML, P., E, P., LB, R., A, R., 2nd, R. M., P, R., N, S., M, S., A, S., R, S., SJ, S., JR, S., AD, S., LR, T., PJ, T., P, T., A, T., PJ, T., S, U., JJJ, V. D. H., F, V., Y, V., E, V., M, V. H., W, W., Y, W., M, W., J, W., KC, W., CHD, W., AD, W., ZZ, X., JR, Z., Y, Z., Q, Z., R, K., & JG, C. (2019). Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.. Nature biotechnology. https://doi.org/10.1038/s41587-019-0209-9

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pubmed · retrieved 2026-11-10T12:52:35.950Z