Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes

Kishwar Shafin, Trevor Pesout, Ryan Lorig-Roach, Marina Haukness, Hugh E. Olsen, Colleen Bosworth, Joel Armstrong, Kristof Tigyi, Nicholas Maurer, Sergey Koren, Fritz J. Sedlazeck, Tobias Marschall, Simon Mayes, Vania Costa, Justin M. Zook, Kelvin J. Liu, Duncan Kilburn, Melanie Sorensen, Katy M. Munson, Mitchell R. Vollger, Jean Monlong, Erik Garrison, Evan E. Eichler, Sofie Salama, David Haussler, Richard E. Green, Mark Akeson, Adam Phillippy, Karen H. Miga, Paolo Carnevali, Miten Jain, Benedict Paten

Open source

DOI: 10.1038/s41587-020-0503-6
Published: 2020-05-04
Container: Nature Biotechnology
Publisher: Springer Science and Business Media LLC
Open access: unknown

Credibility signals

uncertain Score 64/100 under policy 1.0.0. This is a metadata assessment, not a judgment of the paper's conclusions.

Show all credibility signals

supportingDOI registered: A matching record was returned by Crossref. Source: Crossref; license: CC0 metadata
supportingDOI resolves: A matching record was returned by Crossref. Source: Crossref; license: CC0 metadata
not scoredDirectory of Open Access Journals: No matching DOAJ record was present in this response. No allow-list match; this is not evidence of low credibility. Source: DOAJ; license: CC0
not scoredMEDLINE indexed: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredOpenAlex core source: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredKnown publisher allow-list: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredROR affiliation: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredRetraction Watch retraction: No retraction notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
not scoredRetraction Watch expression of concern: No expression of concern notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
not scoredRetraction Watch correction: No correction notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
not scoredRetraction Watch reinstatement: No reinstatement notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
not scoredOpen access status: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredPublication license: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredPublication version: A publication version was supplied but is not scored. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer
supportingMetadata completeness: All 6 scored descriptive metadata groups are present. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer

Cite this work

BibTeX

@article{allodium:10.1038/s41587-020-0503-6,
  title = {Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes},
  author = {Kishwar Shafin and Trevor Pesout and Ryan Lorig-Roach and Marina Haukness and Hugh E. Olsen and Colleen Bosworth and Joel Armstrong and Kristof Tigyi and Nicholas Maurer and Sergey Koren and Fritz J. Sedlazeck and Tobias Marschall and Simon Mayes and Vania Costa and Justin M. Zook and Kelvin J. Liu and Duncan Kilburn and Melanie Sorensen and Katy M. Munson and Mitchell R. Vollger and Jean Monlong and Erik Garrison and Evan E. Eichler and Sofie Salama and David Haussler and Richard E. Green and Mark Akeson and Adam Phillippy and Karen H. Miga and Paolo Carnevali and Miten Jain and Benedict Paten},
  year = {2020},
  journal = {Nature Biotechnology},
  doi = {10.1038/s41587-020-0503-6},
  url = {https://doi.org/10.1038/s41587-020-0503-6}
}

RIS

TY  - JOUR
TI  - Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes
AU  - Kishwar Shafin
AU  - Trevor Pesout
AU  - Ryan Lorig-Roach
AU  - Marina Haukness
AU  - Hugh E. Olsen
AU  - Colleen Bosworth
AU  - Joel Armstrong
AU  - Kristof Tigyi
AU  - Nicholas Maurer
AU  - Sergey Koren
AU  - Fritz J. Sedlazeck
AU  - Tobias Marschall
AU  - Simon Mayes
AU  - Vania Costa
AU  - Justin M. Zook
AU  - Kelvin J. Liu
AU  - Duncan Kilburn
AU  - Melanie Sorensen
AU  - Katy M. Munson
AU  - Mitchell R. Vollger
AU  - Jean Monlong
AU  - Erik Garrison
AU  - Evan E. Eichler
AU  - Sofie Salama
AU  - David Haussler
AU  - Richard E. Green
AU  - Mark Akeson
AU  - Adam Phillippy
AU  - Karen H. Miga
AU  - Paolo Carnevali
AU  - Miten Jain
AU  - Benedict Paten
PY  - 2020
JO  - Nature Biotechnology
DO  - 10.1038/s41587-020-0503-6
UR  - https://doi.org/10.1038/s41587-020-0503-6
ER  -

APA

Shafin, K., Pesout, T., Lorig-Roach, R., Haukness, M., Olsen, H. E., Bosworth, C., Armstrong, J., Tigyi, K., Maurer, N., Koren, S., Sedlazeck, F. J., Marschall, T., Mayes, S., Costa, V., Zook, J. M., Liu, K. J., Kilburn, D., Sorensen, M., Munson, K. M., Vollger, M. R., Monlong, J., Garrison, E., Eichler, E. E., Salama, S., Haussler, D., Green, R. E., Akeson, M., Phillippy, A., Miga, K. H., Carnevali, P., Jain, M., & Paten, B. (2020). Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes. Nature Biotechnology. https://doi.org/10.1038/s41587-020-0503-6

Source records

crossref · retrieved 2026-09-26T04:46:43.304Z