Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.

Pardo-Palacios FJ, Wang D, Reese F, Diekhans M, Carbonell-Sala S, Williams B, Loveland JE, De María M, Adams MS, Balderrama-Gutierrez G, Behera AK, Gonzalez Martinez JM, Hunt T, Lagarde J, Liang CE, Li H, Meade MJ, Moraga Amador DA, Prjibelski AD, Birol I, Bostan H, Brooks AM, Çelik MH, Chen Y, Du MRM, Felton C, Göke J, Hafezqorani S, Herwig R, Kawaji H, Lee J, Li JL, Lienhard M, Mikheenko A, Mulligan D, Nip KM, Pertea M, Ritchie ME, Sim AD, Tang AD, Wan YK, Wang C, Wong BY, Yang C, Barnes I, Berry AE, Capella-Gutierrez S, Cousineau A, Dhillon N, Fernandez-Gonzalez JM, Ferrández-Peral L, Garcia-Reyero N, Götz S, Hernández-Ferrer C, Kondratova L, Liu T, Martinez-Martin A, Menor C, Mestre-Tomás J, Mudge JM, Panayotova NG, Paniagua A, Repchevsky D, Ren X, Rouchka E, Saint-John B, Sapena E, Sheynkman L, Smith ML, Suner MM, Takahashi H, Youngworth IA, Carninci P, Denslow ND, Guigó R, Hunter ME, Maehr R, Shen Y, Tilgner HU, Wold BJ, Vollmers C, Frankish A, Au KF, Sheynkman GM, Mortazavi A, Conesa A, Brooks AN

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DOI
10.1038/s41592-024-02298-3
Published
2024 Jul
Container
Nature methods
Publisher
Not recorded
Open access
yes

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BibTeX

@article{allodium:10.1038/s41592-024-02298-3,
  title = {Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.},
  author = {Pardo-Palacios FJ and Wang D and Reese F and Diekhans M and Carbonell-Sala S and Williams B and Loveland JE and De María M and Adams MS and Balderrama-Gutierrez G and Behera AK and Gonzalez Martinez JM and Hunt T and Lagarde J and Liang CE and Li H and Meade MJ and Moraga Amador DA and Prjibelski AD and Birol I and Bostan H and Brooks AM and Çelik MH and Chen Y and Du MRM and Felton C and Göke J and Hafezqorani S and Herwig R and Kawaji H and Lee J and Li JL and Lienhard M and Mikheenko A and Mulligan D and Nip KM and Pertea M and Ritchie ME and Sim AD and Tang AD and Wan YK and Wang C and Wong BY and Yang C and Barnes I and Berry AE and Capella-Gutierrez S and Cousineau A and Dhillon N and Fernandez-Gonzalez JM and Ferrández-Peral L and Garcia-Reyero N and Götz S and Hernández-Ferrer C and Kondratova L and Liu T and Martinez-Martin A and Menor C and Mestre-Tomás J and Mudge JM and Panayotova NG and Paniagua A and Repchevsky D and Ren X and Rouchka E and Saint-John B and Sapena E and Sheynkman L and Smith ML and Suner MM and Takahashi H and Youngworth IA and Carninci P and Denslow ND and Guigó R and Hunter ME and Maehr R and Shen Y and Tilgner HU and Wold BJ and Vollmers C and Frankish A and Au KF and Sheynkman GM and Mortazavi A and Conesa A and Brooks AN},
  year = {2024},
  journal = {Nature methods},
  doi = {10.1038/s41592-024-02298-3},
  url = {https://doi.org/10.1038/s41592-024-02298-3}
}

RIS

TY  - JOUR
TI  - Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.
AU  - Pardo-Palacios FJ
AU  - Wang D
AU  - Reese F
AU  - Diekhans M
AU  - Carbonell-Sala S
AU  - Williams B
AU  - Loveland JE
AU  - De María M
AU  - Adams MS
AU  - Balderrama-Gutierrez G
AU  - Behera AK
AU  - Gonzalez Martinez JM
AU  - Hunt T
AU  - Lagarde J
AU  - Liang CE
AU  - Li H
AU  - Meade MJ
AU  - Moraga Amador DA
AU  - Prjibelski AD
AU  - Birol I
AU  - Bostan H
AU  - Brooks AM
AU  - Çelik MH
AU  - Chen Y
AU  - Du MRM
AU  - Felton C
AU  - Göke J
AU  - Hafezqorani S
AU  - Herwig R
AU  - Kawaji H
AU  - Lee J
AU  - Li JL
AU  - Lienhard M
AU  - Mikheenko A
AU  - Mulligan D
AU  - Nip KM
AU  - Pertea M
AU  - Ritchie ME
AU  - Sim AD
AU  - Tang AD
AU  - Wan YK
AU  - Wang C
AU  - Wong BY
AU  - Yang C
AU  - Barnes I
AU  - Berry AE
AU  - Capella-Gutierrez S
AU  - Cousineau A
AU  - Dhillon N
AU  - Fernandez-Gonzalez JM
AU  - Ferrández-Peral L
AU  - Garcia-Reyero N
AU  - Götz S
AU  - Hernández-Ferrer C
AU  - Kondratova L
AU  - Liu T
AU  - Martinez-Martin A
AU  - Menor C
AU  - Mestre-Tomás J
AU  - Mudge JM
AU  - Panayotova NG
AU  - Paniagua A
AU  - Repchevsky D
AU  - Ren X
AU  - Rouchka E
AU  - Saint-John B
AU  - Sapena E
AU  - Sheynkman L
AU  - Smith ML
AU  - Suner MM
AU  - Takahashi H
AU  - Youngworth IA
AU  - Carninci P
AU  - Denslow ND
AU  - Guigó R
AU  - Hunter ME
AU  - Maehr R
AU  - Shen Y
AU  - Tilgner HU
AU  - Wold BJ
AU  - Vollmers C
AU  - Frankish A
AU  - Au KF
AU  - Sheynkman GM
AU  - Mortazavi A
AU  - Conesa A
AU  - Brooks AN
PY  - 2024
JO  - Nature methods
DO  - 10.1038/s41592-024-02298-3
UR  - https://doi.org/10.1038/s41592-024-02298-3
ER  -

APA

FJ, P., D, W., F, R., M, D., S, C., B, W., JE, L., M, D. M., MS, A., G, B., AK, B., JM, G. M., T, H., J, L., CE, L., H, L., MJ, M., DA, M. A., AD, P., I, B., H, B., AM, B., MH, Ç., Y, C., MRM, D., C, F., J, G., S, H., R, H., H, K., J, L., JL, L., M, L., A, M., D, M., KM, N., M, P., ME, R., AD, S., AD, T., YK, W., C, W., BY, W., C, Y., I, B., AE, B., S, C., A, C., N, D., JM, F., L, F., N, G., S, G., C, H., L, K., T, L., A, M., C, M., J, M., JM, M., NG, P., A, P., D, R., X, R., E, R., B, S., E, S., L, S., ML, S., MM, S., H, T., IA, Y., P, C., ND, D., R, G., ME, H., R, M., Y, S., HU, T., BJ, W., C, V., A, F., KF, A., GM, S., A, M., A, C., & AN, B. (2024). Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.. Nature methods. https://doi.org/10.1038/s41592-024-02298-3

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