Translon: a single term for translated regions

Michał I. Świrski, Jack A. S. Tierney, M. Mar Albà, Dmitry E. Andreev, Julie L. Aspden, John F. Atkins, Michal Bassani-Sternberg, Marla J. Berry, Stefano Biffo, Kathleen Boris-Lawrie, Mark Borodovsky, Ian Brierley, Matthew Brook, Marie A. Brunet, Janusz M. Bujnicki, Neva Caliskan, Lorenzo Calviello, Anne-Ruxandra Carvunis, Jamie H. D. Cate, Can Cenik, Kung Yao Chang, Yiwen Chen, Sonia Chothani, Jyoti S. Choudhary, Patricia L. Clark, Jim Clauwaert, Lynn Cooley, Erik Dassi, Kellie Dean, Jean-Jacques Diaz, Christoph Dieterich, Rivka Dikstein, Jonathan D. Dinman, Sergey E. Dmitriev, Olga A. Dontsova, Christine M. Dunham, Sandeep M. Eswarappa, Philip J. Farabaugh, Pouya Faridi, Ivo Fierro-Monti, Andrew E. Firth, David Gatfield, Fátima Gebauer, Mikhail S. Gelfand, Nicola K. Gray, Rachel Green, Chris H. Hill, Ya-Ming Hou, Norbert Hübner, Zoya Ignatova, Pavel Ivanov, Shintaro Iwasaki, Rory Johnson, Ahmad Jomaa, Marko Jovanovic, Irwin Jungreis, Manolis Kellis, Jeffrey S. Kieft, Alex V. Kochetov, Eugene V. Koonin, Andrei A. Korostelev, Joanna Kufel, Ivan V. Kulakovskiy, Leo Kurian, Denis L. J. Lafontaine, Ola Larsson, Gary Loughran, Julius Lukeš, Marco Mariotti, Elena S. Martens-Uzunova, Thomas F. Martinez, Akinobu Matsumoto, Joel McManus, Jan Medenbach, Sergey V. Melnikov, Gerben Menschaert, Catharina Merchante, Martin Mikl, W. Allen Miller, Oliver Mühlemann, Olivier Namy, Danny D. Nedialkova, Jozef Nosek, Sandra Orchard, Petar Ozretić, Mihaela Pertea, Dmitri D. Pervouchine, Luísa Romão, David Ron, Xavier Roucou, Maria P. Rubtsova, Jorge Ruiz-Orera, Alan Saghatelian, Steven L. Salzberg, Lucia A. Seale, Cathal Seoighe, Petr V. Sergiev, Premal Shah, Nikolay Shirokikh, Sarah A. Slavoff, Nahum Sonenberg, Timothy J. Stasevich, Roman J. Szczesny, Tiina Tamm, Marek Tchórzewski, Ivan Topisirovic, Michel L. Tremblay, Tamir Tuller, Igor Ulitsky, Leoš Shivaya Valášek, Petra Van Damme, Gabriella Viero, Juan Antonio Vizcaino, Christine Vogel, Edward W. J. Wallace, Jonathan S. Weissman, Eric Westhof, Nicola Whiffin, Daniel N. Wilson, Zhi Xie, Jonathan W. Yewdell, Martina M. Yordanova, Chien-Hung Yu, Vyacheslav Yurchenko, Bojan Zagrovic, Unknown, Maria Inês Almeida, Nese Atabey, Nikolaos Balatsos, Pavel Baranov, Anca Simona Bojan, Theodora Choli-Papadopoulou, Pierre Close, Victoria Cowling, Erik Dassi, Alexandre David, Kellie Dean, Jean-Jacques Diaz, Aleksandar Eftimov, Fátima Gebauer, Mark Helm, Cristina-Adela Iuga, Dana Jurkovičová, Arvydas Kanopka, Denis Lafontaine, Elena Martens-Uzunova, Lucia Messingerová, Henrik Nielsen, Petar Ozretić, Mehmet Ozturk, Vicent Pelechano, Marianna Penzo, Paulina Podszywalow-Bartnicka, Lejla Pojskić, John Le Quesne, Luísa Romão, Barak Rotblat, Ariel Stanhill, Georg Stoecklin, Tiina Tamm, Marek Tchorzewski, Vladimir Trajković, Leos Shivaya Valasek, Eivind Valen, Sinisa Volarevic, Ljubica Vucicevic, Kathleen Watt, Anne Willis, Masa Zdralevic, Taja Železnik Ramuta, Eivind Valen, Pavel V. Baranov

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DOI
10.1038/s41592-025-02810-3
Published
2025-09-01
Container
Nature Methods
Publisher
Springer Science and Business Media LLC
Open access
unknown

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BibTeX

@article{allodium:10.1038/s41592-025-02810-3,
  title = {Translon: a single term for translated regions},
  author = {Michał I. Świrski and Jack A. S. Tierney and M. Mar Albà and Dmitry E. Andreev and Julie L. Aspden and John F. Atkins and Michal Bassani-Sternberg and Marla J. Berry and Stefano Biffo and Kathleen Boris-Lawrie and Mark Borodovsky and Ian Brierley and Matthew Brook and Marie A. Brunet and Janusz M. Bujnicki and Neva Caliskan and Lorenzo Calviello and Anne-Ruxandra Carvunis and Jamie H. D. Cate and Can Cenik and Kung Yao Chang and Yiwen Chen and Sonia Chothani and Jyoti S. Choudhary and Patricia L. Clark and Jim Clauwaert and Lynn Cooley and Erik Dassi and Kellie Dean and Jean-Jacques Diaz and Christoph Dieterich and Rivka Dikstein and Jonathan D. Dinman and Sergey E. Dmitriev and Olga A. Dontsova and Christine M. Dunham and Sandeep M. Eswarappa and Philip J. Farabaugh and Pouya Faridi and Ivo Fierro-Monti and Andrew E. Firth and David Gatfield and Fátima Gebauer and Mikhail S. Gelfand and Nicola K. Gray and Rachel Green and Chris H. Hill and Ya-Ming Hou and Norbert Hübner and Zoya Ignatova and Pavel Ivanov and Shintaro Iwasaki and Rory Johnson and Ahmad Jomaa and Marko Jovanovic and Irwin Jungreis and Manolis Kellis and Jeffrey S. Kieft and Alex V. Kochetov and Eugene V. Koonin and Andrei A. Korostelev and Joanna Kufel and Ivan V. Kulakovskiy and Leo Kurian and Denis L. J. Lafontaine and Ola Larsson and Gary Loughran and Julius Lukeš and Marco Mariotti and Elena S. Martens-Uzunova and Thomas F. Martinez and Akinobu Matsumoto and Joel McManus and Jan Medenbach and Sergey V. Melnikov and Gerben Menschaert and Catharina Merchante and Martin Mikl and W. Allen Miller and Oliver Mühlemann and Olivier Namy and Danny D. Nedialkova and Jozef Nosek and Sandra Orchard and Petar Ozretić and Mihaela Pertea and Dmitri D. Pervouchine and Luísa Romão and David Ron and Xavier Roucou and Maria P. Rubtsova and Jorge Ruiz-Orera and Alan Saghatelian and Steven L. Salzberg and Lucia A. Seale and Cathal Seoighe and Petr V. Sergiev and Premal Shah and Nikolay Shirokikh and Sarah A. Slavoff and Nahum Sonenberg and Timothy J. Stasevich and Roman J. Szczesny and Tiina Tamm and Marek Tchórzewski and Ivan Topisirovic and Michel L. Tremblay and Tamir Tuller and Igor Ulitsky and Leoš Shivaya Valášek and Petra Van Damme and Gabriella Viero and Juan Antonio Vizcaino and Christine Vogel and Edward W. J. Wallace and Jonathan S. Weissman and Eric Westhof and Nicola Whiffin and Daniel N. Wilson and Zhi Xie and Jonathan W. Yewdell and Martina M. Yordanova and Chien-Hung Yu and Vyacheslav Yurchenko and Bojan Zagrovic and Unknown and Maria Inês Almeida and Nese Atabey and Nikolaos Balatsos and Pavel Baranov and Anca Simona Bojan and Theodora Choli-Papadopoulou and Pierre Close and Victoria Cowling and Erik Dassi and Alexandre David and Kellie Dean and Jean-Jacques Diaz and Aleksandar Eftimov and Fátima Gebauer and Mark Helm and Cristina-Adela Iuga and Dana Jurkovičová and Arvydas Kanopka and Denis Lafontaine and Elena Martens-Uzunova and Lucia Messingerová and Henrik Nielsen and Petar Ozretić and Mehmet Ozturk and Vicent Pelechano and Marianna Penzo and Paulina Podszywalow-Bartnicka and Lejla Pojskić and John Le Quesne and Luísa Romão and Barak Rotblat and Ariel Stanhill and Georg Stoecklin and Tiina Tamm and Marek Tchorzewski and Vladimir Trajković and Leos Shivaya Valasek and Eivind Valen and Sinisa Volarevic and Ljubica Vucicevic and Kathleen Watt and Anne Willis and Masa Zdralevic and Taja Železnik Ramuta and Eivind Valen and Pavel V. Baranov},
  year = {2025},
  journal = {Nature Methods},
  doi = {10.1038/s41592-025-02810-3},
  url = {https://doi.org/10.1038/s41592-025-02810-3}
}

RIS

TY  - JOUR
TI  - Translon: a single term for translated regions
AU  - Michał I. Świrski
AU  - Jack A. S. Tierney
AU  - M. Mar Albà
AU  - Dmitry E. Andreev
AU  - Julie L. Aspden
AU  - John F. Atkins
AU  - Michal Bassani-Sternberg
AU  - Marla J. Berry
AU  - Stefano Biffo
AU  - Kathleen Boris-Lawrie
AU  - Mark Borodovsky
AU  - Ian Brierley
AU  - Matthew Brook
AU  - Marie A. Brunet
AU  - Janusz M. Bujnicki
AU  - Neva Caliskan
AU  - Lorenzo Calviello
AU  - Anne-Ruxandra Carvunis
AU  - Jamie H. D. Cate
AU  - Can Cenik
AU  - Kung Yao Chang
AU  - Yiwen Chen
AU  - Sonia Chothani
AU  - Jyoti S. Choudhary
AU  - Patricia L. Clark
AU  - Jim Clauwaert
AU  - Lynn Cooley
AU  - Erik Dassi
AU  - Kellie Dean
AU  - Jean-Jacques Diaz
AU  - Christoph Dieterich
AU  - Rivka Dikstein
AU  - Jonathan D. Dinman
AU  - Sergey E. Dmitriev
AU  - Olga A. Dontsova
AU  - Christine M. Dunham
AU  - Sandeep M. Eswarappa
AU  - Philip J. Farabaugh
AU  - Pouya Faridi
AU  - Ivo Fierro-Monti
AU  - Andrew E. Firth
AU  - David Gatfield
AU  - Fátima Gebauer
AU  - Mikhail S. Gelfand
AU  - Nicola K. Gray
AU  - Rachel Green
AU  - Chris H. Hill
AU  - Ya-Ming Hou
AU  - Norbert Hübner
AU  - Zoya Ignatova
AU  - Pavel Ivanov
AU  - Shintaro Iwasaki
AU  - Rory Johnson
AU  - Ahmad Jomaa
AU  - Marko Jovanovic
AU  - Irwin Jungreis
AU  - Manolis Kellis
AU  - Jeffrey S. Kieft
AU  - Alex V. Kochetov
AU  - Eugene V. Koonin
AU  - Andrei A. Korostelev
AU  - Joanna Kufel
AU  - Ivan V. Kulakovskiy
AU  - Leo Kurian
AU  - Denis L. J. Lafontaine
AU  - Ola Larsson
AU  - Gary Loughran
AU  - Julius Lukeš
AU  - Marco Mariotti
AU  - Elena S. Martens-Uzunova
AU  - Thomas F. Martinez
AU  - Akinobu Matsumoto
AU  - Joel McManus
AU  - Jan Medenbach
AU  - Sergey V. Melnikov
AU  - Gerben Menschaert
AU  - Catharina Merchante
AU  - Martin Mikl
AU  - W. Allen Miller
AU  - Oliver Mühlemann
AU  - Olivier Namy
AU  - Danny D. Nedialkova
AU  - Jozef Nosek
AU  - Sandra Orchard
AU  - Petar Ozretić
AU  - Mihaela Pertea
AU  - Dmitri D. Pervouchine
AU  - Luísa Romão
AU  - David Ron
AU  - Xavier Roucou
AU  - Maria P. Rubtsova
AU  - Jorge Ruiz-Orera
AU  - Alan Saghatelian
AU  - Steven L. Salzberg
AU  - Lucia A. Seale
AU  - Cathal Seoighe
AU  - Petr V. Sergiev
AU  - Premal Shah
AU  - Nikolay Shirokikh
AU  - Sarah A. Slavoff
AU  - Nahum Sonenberg
AU  - Timothy J. Stasevich
AU  - Roman J. Szczesny
AU  - Tiina Tamm
AU  - Marek Tchórzewski
AU  - Ivan Topisirovic
AU  - Michel L. Tremblay
AU  - Tamir Tuller
AU  - Igor Ulitsky
AU  - Leoš Shivaya Valášek
AU  - Petra Van Damme
AU  - Gabriella Viero
AU  - Juan Antonio Vizcaino
AU  - Christine Vogel
AU  - Edward W. J. Wallace
AU  - Jonathan S. Weissman
AU  - Eric Westhof
AU  - Nicola Whiffin
AU  - Daniel N. Wilson
AU  - Zhi Xie
AU  - Jonathan W. Yewdell
AU  - Martina M. Yordanova
AU  - Chien-Hung Yu
AU  - Vyacheslav Yurchenko
AU  - Bojan Zagrovic
AU  - Unknown
AU  - Maria Inês Almeida
AU  - Nese Atabey
AU  - Nikolaos Balatsos
AU  - Pavel Baranov
AU  - Anca Simona Bojan
AU  - Theodora Choli-Papadopoulou
AU  - Pierre Close
AU  - Victoria Cowling
AU  - Erik Dassi
AU  - Alexandre David
AU  - Kellie Dean
AU  - Jean-Jacques Diaz
AU  - Aleksandar Eftimov
AU  - Fátima Gebauer
AU  - Mark Helm
AU  - Cristina-Adela Iuga
AU  - Dana Jurkovičová
AU  - Arvydas Kanopka
AU  - Denis Lafontaine
AU  - Elena Martens-Uzunova
AU  - Lucia Messingerová
AU  - Henrik Nielsen
AU  - Petar Ozretić
AU  - Mehmet Ozturk
AU  - Vicent Pelechano
AU  - Marianna Penzo
AU  - Paulina Podszywalow-Bartnicka
AU  - Lejla Pojskić
AU  - John Le Quesne
AU  - Luísa Romão
AU  - Barak Rotblat
AU  - Ariel Stanhill
AU  - Georg Stoecklin
AU  - Tiina Tamm
AU  - Marek Tchorzewski
AU  - Vladimir Trajković
AU  - Leos Shivaya Valasek
AU  - Eivind Valen
AU  - Sinisa Volarevic
AU  - Ljubica Vucicevic
AU  - Kathleen Watt
AU  - Anne Willis
AU  - Masa Zdralevic
AU  - Taja Železnik Ramuta
AU  - Eivind Valen
AU  - Pavel V. Baranov
PY  - 2025
JO  - Nature Methods
DO  - 10.1038/s41592-025-02810-3
UR  - https://doi.org/10.1038/s41592-025-02810-3
ER  -

APA

Świrski, M. I., Tierney, J. A. S., Albà, M. M., Andreev, D. E., Aspden, J. L., Atkins, J. F., Bassani-Sternberg, M., Berry, M. J., Biffo, S., Boris-Lawrie, K., Borodovsky, M., Brierley, I., Brook, M., Brunet, M. A., Bujnicki, J. M., Caliskan, N., Calviello, L., Carvunis, A., Cate, J. H. D., Cenik, C., Chang, K. Y., Chen, Y., Chothani, S., Choudhary, J. S., Clark, P. L., Clauwaert, J., Cooley, L., Dassi, E., Dean, K., Diaz, J., Dieterich, C., Dikstein, R., Dinman, J. D., Dmitriev, S. E., Dontsova, O. A., Dunham, C. M., Eswarappa, S. M., Farabaugh, P. J., Faridi, P., Fierro-Monti, I., Firth, A. E., Gatfield, D., Gebauer, F., Gelfand, M. S., Gray, N. K., Green, R., Hill, C. H., Hou, Y., Hübner, N., Ignatova, Z., Ivanov, P., Iwasaki, S., Johnson, R., Jomaa, A., Jovanovic, M., Jungreis, I., Kellis, M., Kieft, J. S., Kochetov, A. V., Koonin, E. V., Korostelev, A. A., Kufel, J., Kulakovskiy, I. V., Kurian, L., Lafontaine, D. L. J., Larsson, O., Loughran, G., Lukeš, J., Mariotti, M., Martens-Uzunova, E. S., Martinez, T. F., Matsumoto, A., McManus, J., Medenbach, J., Melnikov, S. V., Menschaert, G., Merchante, C., Mikl, M., Miller, W. A., Mühlemann, O., Namy, O., Nedialkova, D. D., Nosek, J., Orchard, S., Ozretić, P., Pertea, M., Pervouchine, D. D., Romão, L., Ron, D., Roucou, X., Rubtsova, M. P., Ruiz-Orera, J., Saghatelian, A., Salzberg, S. L., Seale, L. A., Seoighe, C., Sergiev, P. V., Shah, P., Shirokikh, N., Slavoff, S. A., Sonenberg, N., Stasevich, T. J., Szczesny, R. J., Tamm, T., Tchórzewski, M., Topisirovic, I., Tremblay, M. L., Tuller, T., Ulitsky, I., Valášek, L. S., Damme, P. V., Viero, G., Vizcaino, J. A., Vogel, C., Wallace, E. W. J., Weissman, J. S., Westhof, E., Whiffin, N., Wilson, D. N., Xie, Z., Yewdell, J. W., Yordanova, M. M., Yu, C., Yurchenko, V., Zagrovic, B., Unknown, Almeida, M. I., Atabey, N., Balatsos, N., Baranov, P., Bojan, A. S., Choli-Papadopoulou, T., Close, P., Cowling, V., Dassi, E., David, A., Dean, K., Diaz, J., Eftimov, A., Gebauer, F., Helm, M., Iuga, C., Jurkovičová, D., Kanopka, A., Lafontaine, D., Martens-Uzunova, E., Messingerová, L., Nielsen, H., Ozretić, P., Ozturk, M., Pelechano, V., Penzo, M., Podszywalow-Bartnicka, P., Pojskić, L., Quesne, J. L., Romão, L., Rotblat, B., Stanhill, A., Stoecklin, G., Tamm, T., Tchorzewski, M., Trajković, V., Valasek, L. S., Valen, E., Volarevic, S., Vucicevic, L., Watt, K., Willis, A., Zdralevic, M., Ramuta, T. Ž., Valen, E., & Baranov, P. V. (2025). Translon: a single term for translated regions. Nature Methods. https://doi.org/10.1038/s41592-025-02810-3

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