AI proteomics: from protein identification to virtual cells

Yingying Sun, Jun A, Zhiwei Liu, Rui Sun, Liujia Qian, Samuel H. Payne, Wout Bittremieux, Markus Ralser, Chen Li, Yi Chen, Zhen Dong, Yasset Perez-Riverol, Asif Khan, Chris Sander, Ruedi Aebersold, Juan Antonio Vizcaíno, Jonathan R. Krieger, Jianhua Yao, Wen Han, Linfeng Zhang, Yunping Zhu, Yue Xuan, Benjamin Boyang Sun, Liang Qiao, Henning Hermjakob, Haixu Tang, Huanhuan Gao, Yamin Deng, Qing Zhong, Cheng Chang, Nuno Bandeira, Ming Li, Weinan E, Siqi Sun, Yuedong Yang, Gilbert S. Omenn, Yue Zhang, Ping Xu, Yan Fu, Xiaowen Liu, Christopher M. Overall, Yu Wang, Eric W. Deutsch, Luonan Chen, Jürgen Cox, Vadim Demichev, Fuchu He, Jiaxing Huang, Huilin Jin, Chao Liu, Nan Li, Zhongzhi Luan, Jiangning Song, Kaicheng Yu, Wanggen Wan, Tai Wang, Kang Zhang, Le Zhang, Peter A. Bell, Matthias Mann, Bing Zhang, Tiannan Guo

Open source

DOI: 10.1038/s41592-026-03085-y
Published: 2026-07-28
Container: Nature Methods
Publisher: Springer Science and Business Media LLC
Open access: unknown

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Cite this work

BibTeX

@article{allodium:10.1038/s41592-026-03085-y,
  title = {AI proteomics: from protein identification to virtual cells},
  author = {Yingying Sun and Jun A and Zhiwei Liu and Rui Sun and Liujia Qian and Samuel H. Payne and Wout Bittremieux and Markus Ralser and Chen Li and Yi Chen and Zhen Dong and Yasset Perez-Riverol and Asif Khan and Chris Sander and Ruedi Aebersold and Juan Antonio Vizcaíno and Jonathan R. Krieger and Jianhua Yao and Wen Han and Linfeng Zhang and Yunping Zhu and Yue Xuan and Benjamin Boyang Sun and Liang Qiao and Henning Hermjakob and Haixu Tang and Huanhuan Gao and Yamin Deng and Qing Zhong and Cheng Chang and Nuno Bandeira and Ming Li and Weinan E and Siqi Sun and Yuedong Yang and Gilbert S. Omenn and Yue Zhang and Ping Xu and Yan Fu and Xiaowen Liu and Christopher M. Overall and Yu Wang and Eric W. Deutsch and Luonan Chen and Jürgen Cox and Vadim Demichev and Fuchu He and Jiaxing Huang and Huilin Jin and Chao Liu and Nan Li and Zhongzhi Luan and Jiangning Song and Kaicheng Yu and Wanggen Wan and Tai Wang and Kang Zhang and Le Zhang and Peter A. Bell and Matthias Mann and Bing Zhang and Tiannan Guo},
  year = {2026},
  journal = {Nature Methods},
  doi = {10.1038/s41592-026-03085-y},
  url = {https://doi.org/10.1038/s41592-026-03085-y}
}

RIS

TY  - JOUR
TI  - AI proteomics: from protein identification to virtual cells
AU  - Yingying Sun
AU  - Jun A
AU  - Zhiwei Liu
AU  - Rui Sun
AU  - Liujia Qian
AU  - Samuel H. Payne
AU  - Wout Bittremieux
AU  - Markus Ralser
AU  - Chen Li
AU  - Yi Chen
AU  - Zhen Dong
AU  - Yasset Perez-Riverol
AU  - Asif Khan
AU  - Chris Sander
AU  - Ruedi Aebersold
AU  - Juan Antonio Vizcaíno
AU  - Jonathan R. Krieger
AU  - Jianhua Yao
AU  - Wen Han
AU  - Linfeng Zhang
AU  - Yunping Zhu
AU  - Yue Xuan
AU  - Benjamin Boyang Sun
AU  - Liang Qiao
AU  - Henning Hermjakob
AU  - Haixu Tang
AU  - Huanhuan Gao
AU  - Yamin Deng
AU  - Qing Zhong
AU  - Cheng Chang
AU  - Nuno Bandeira
AU  - Ming Li
AU  - Weinan E
AU  - Siqi Sun
AU  - Yuedong Yang
AU  - Gilbert S. Omenn
AU  - Yue Zhang
AU  - Ping Xu
AU  - Yan Fu
AU  - Xiaowen Liu
AU  - Christopher M. Overall
AU  - Yu Wang
AU  - Eric W. Deutsch
AU  - Luonan Chen
AU  - Jürgen Cox
AU  - Vadim Demichev
AU  - Fuchu He
AU  - Jiaxing Huang
AU  - Huilin Jin
AU  - Chao Liu
AU  - Nan Li
AU  - Zhongzhi Luan
AU  - Jiangning Song
AU  - Kaicheng Yu
AU  - Wanggen Wan
AU  - Tai Wang
AU  - Kang Zhang
AU  - Le Zhang
AU  - Peter A. Bell
AU  - Matthias Mann
AU  - Bing Zhang
AU  - Tiannan Guo
PY  - 2026
JO  - Nature Methods
DO  - 10.1038/s41592-026-03085-y
UR  - https://doi.org/10.1038/s41592-026-03085-y
ER  -

APA

Sun, Y., A, J., Liu, Z., Sun, R., Qian, L., Payne, S. H., Bittremieux, W., Ralser, M., Li, C., Chen, Y., Dong, Z., Perez-Riverol, Y., Khan, A., Sander, C., Aebersold, R., Vizcaíno, J. A., Krieger, J. R., Yao, J., Han, W., Zhang, L., Zhu, Y., Xuan, Y., Sun, B. B., Qiao, L., Hermjakob, H., Tang, H., Gao, H., Deng, Y., Zhong, Q., Chang, C., Bandeira, N., Li, M., E, W., Sun, S., Yang, Y., Omenn, G. S., Zhang, Y., Xu, P., Fu, Y., Liu, X., Overall, C. M., Wang, Y., Deutsch, E. W., Chen, L., Cox, J., Demichev, V., He, F., Huang, J., Jin, H., Liu, C., Li, N., Luan, Z., Song, J., Yu, K., Wan, W., Wang, T., Zhang, K., Zhang, L., Bell, P. A., Mann, M., Zhang, B., & Guo, T. (2026). AI proteomics: from protein identification to virtual cells. Nature Methods. https://doi.org/10.1038/s41592-026-03085-y

Source records

crossref · retrieved 2026-09-26T06:29:08.288Z