Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS

Jeanette A. I. Johnson, Ashley P. Tsang, Jacob T. Mitchell, David L. Zhou, Julia Bowden, Emily Davis-Marcisak, Thomas Sherman, Ted Liefeld, Melanie Loth, Loyal A. Goff, Jacquelyn W. Zimmerman, Ben Kinny-Köster, Elizabeth M. Jaffee, Pablo Tamayo, Jill P. Mesirov, Michael Reich, Elana J. Fertig, Genevieve L. Stein-O’Brien

Open source

DOI: 10.1038/s41596-023-00892-x
Published: 2023-11-21
Container: Nature Protocols
Publisher: Springer Science and Business Media LLC
Open access: unknown

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Cite this work

BibTeX

@article{allodium:10.1038/s41596-023-00892-x,
  title = {Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS},
  author = {Jeanette A. I. Johnson and Ashley P. Tsang and Jacob T. Mitchell and David L. Zhou and Julia Bowden and Emily Davis-Marcisak and Thomas Sherman and Ted Liefeld and Melanie Loth and Loyal A. Goff and Jacquelyn W. Zimmerman and Ben Kinny-Köster and Elizabeth M. Jaffee and Pablo Tamayo and Jill P. Mesirov and Michael Reich and Elana J. Fertig and Genevieve L. Stein-O’Brien},
  year = {2023},
  journal = {Nature Protocols},
  doi = {10.1038/s41596-023-00892-x},
  url = {https://doi.org/10.1038/s41596-023-00892-x}
}

RIS

TY  - JOUR
TI  - Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
AU  - Jeanette A. I. Johnson
AU  - Ashley P. Tsang
AU  - Jacob T. Mitchell
AU  - David L. Zhou
AU  - Julia Bowden
AU  - Emily Davis-Marcisak
AU  - Thomas Sherman
AU  - Ted Liefeld
AU  - Melanie Loth
AU  - Loyal A. Goff
AU  - Jacquelyn W. Zimmerman
AU  - Ben Kinny-Köster
AU  - Elizabeth M. Jaffee
AU  - Pablo Tamayo
AU  - Jill P. Mesirov
AU  - Michael Reich
AU  - Elana J. Fertig
AU  - Genevieve L. Stein-O’Brien
PY  - 2023
JO  - Nature Protocols
DO  - 10.1038/s41596-023-00892-x
UR  - https://doi.org/10.1038/s41596-023-00892-x
ER  -

APA

Johnson, J. A. I., Tsang, A. P., Mitchell, J. T., Zhou, D. L., Bowden, J., Davis-Marcisak, E., Sherman, T., Liefeld, T., Loth, M., Goff, L. A., Zimmerman, J. W., Kinny-Köster, B., Jaffee, E. M., Tamayo, P., Mesirov, J. P., Reich, M., Fertig, E. J., & Stein-O’Brien, G. L. (2023). Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS. Nature Protocols. https://doi.org/10.1038/s41596-023-00892-x

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crossref · retrieved 2026-09-25T23:09:01.789Z