spOT-NMF: gene expression deconvolution via optimal transport with proximity-aware niche mapping for spatial transcriptomics

Aly O Abdelkareem, Gurveer S Gill, Varsha Thoppey Manoharan, Theodore B Verhey, A Sorana Morrissy

Open source

DOI: 10.1093/bib/bbag606
Published: 2026-11
Container: Briefings in Bioinformatics
Publisher: Oxford University Press (OUP)
Open access: unknown

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Cite this work

BibTeX

@article{allodium:10.1093/bib/bbag606,
  title = {spOT-NMF: gene expression deconvolution via optimal transport with proximity-aware niche mapping for spatial transcriptomics},
  author = {Aly O Abdelkareem and Gurveer S Gill and Varsha Thoppey Manoharan and Theodore B Verhey and A Sorana Morrissy},
  year = {2026},
  journal = {Briefings in Bioinformatics},
  doi = {10.1093/bib/bbag606},
  url = {https://doi.org/10.1093/bib/bbag606}
}

RIS

TY  - JOUR
TI  - spOT-NMF: gene expression deconvolution via optimal transport with proximity-aware niche mapping for spatial transcriptomics
AU  - Aly O Abdelkareem
AU  - Gurveer S Gill
AU  - Varsha Thoppey Manoharan
AU  - Theodore B Verhey
AU  - A Sorana Morrissy
PY  - 2026
JO  - Briefings in Bioinformatics
DO  - 10.1093/bib/bbag606
UR  - https://doi.org/10.1093/bib/bbag606
ER  -

APA

Abdelkareem, A. O., Gill, G. S., Manoharan, V. T., Verhey, T. B., & Morrissy, A. S. (2026). spOT-NMF: gene expression deconvolution via optimal transport with proximity-aware niche mapping for spatial transcriptomics. Briefings in Bioinformatics. https://doi.org/10.1093/bib/bbag606

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crossref · retrieved 2026-11-10T07:01:10.819Z