User-driven development and evaluation of an agentic framework for analysis of large pathway diagrams

Marie Corradi, Ivo Djidrovski, Luiz Ladeira, Bernard Staumont, Anouk Verhoeven, Julen Sanz Serrano, Adrien Rougny, Ahmad Vaez, Ahmed Hemedan, Alexander Mazein, Anna Niarakis, Arthur de Carvalho e Silva, Charles Auffray, Egon Willighagen, Eliska Kuchovska, Falk Schreiber, Irina Balaur, Laurence Calzone, Lisa Matthews, Lorenzo Veschini, Marc E Gillespie, Martina Kutmon, Matthias König, Matti van Welzen, Noriko Hiroi, Oxana Lopata, Pierre Klemmer, Rupert Overall, Tim Hofer, Venkata Satagopam, Reinhard Schneider, Marc Teunis, Liesbet Geris, Marek Ostaszewski

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DOI: 10.1093/bioadv/vbag277
Published: 2026
Container: Bioinformatics Advances
Publisher: Oxford University Press (OUP)
Open access: unknown

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Cite this work

BibTeX

@article{allodium:10.1093/bioadv/vbag277,
  title = {User-driven development and evaluation of an agentic framework for analysis of large pathway diagrams},
  author = {Marie Corradi and Ivo Djidrovski and Luiz Ladeira and Bernard Staumont and Anouk Verhoeven and Julen Sanz Serrano and Adrien Rougny and Ahmad Vaez and Ahmed Hemedan and Alexander Mazein and Anna Niarakis and Arthur de Carvalho e Silva and Charles Auffray and Egon Willighagen and Eliska Kuchovska and Falk Schreiber and Irina Balaur and Laurence Calzone and Lisa Matthews and Lorenzo Veschini and Marc E Gillespie and Martina Kutmon and Matthias König and Matti van Welzen and Noriko Hiroi and Oxana Lopata and Pierre Klemmer and Rupert Overall and Tim Hofer and Venkata Satagopam and Reinhard Schneider and Marc Teunis and Liesbet Geris and Marek Ostaszewski},
  year = {2026},
  journal = {Bioinformatics Advances},
  doi = {10.1093/bioadv/vbag277},
  url = {https://doi.org/10.1093/bioadv/vbag277}
}

RIS

TY  - JOUR
TI  - User-driven development and evaluation of an agentic framework for analysis of large pathway diagrams
AU  - Marie Corradi
AU  - Ivo Djidrovski
AU  - Luiz Ladeira
AU  - Bernard Staumont
AU  - Anouk Verhoeven
AU  - Julen Sanz Serrano
AU  - Adrien Rougny
AU  - Ahmad Vaez
AU  - Ahmed Hemedan
AU  - Alexander Mazein
AU  - Anna Niarakis
AU  - Arthur de Carvalho e Silva
AU  - Charles Auffray
AU  - Egon Willighagen
AU  - Eliska Kuchovska
AU  - Falk Schreiber
AU  - Irina Balaur
AU  - Laurence Calzone
AU  - Lisa Matthews
AU  - Lorenzo Veschini
AU  - Marc E Gillespie
AU  - Martina Kutmon
AU  - Matthias König
AU  - Matti van Welzen
AU  - Noriko Hiroi
AU  - Oxana Lopata
AU  - Pierre Klemmer
AU  - Rupert Overall
AU  - Tim Hofer
AU  - Venkata Satagopam
AU  - Reinhard Schneider
AU  - Marc Teunis
AU  - Liesbet Geris
AU  - Marek Ostaszewski
PY  - 2026
JO  - Bioinformatics Advances
DO  - 10.1093/bioadv/vbag277
UR  - https://doi.org/10.1093/bioadv/vbag277
ER  -

APA

Corradi, M., Djidrovski, I., Ladeira, L., Staumont, B., Verhoeven, A., Serrano, J. S., Rougny, A., Vaez, A., Hemedan, A., Mazein, A., Niarakis, A., Silva, A. D. C. E., Auffray, C., Willighagen, E., Kuchovska, E., Schreiber, F., Balaur, I., Calzone, L., Matthews, L., Veschini, L., Gillespie, M. E., Kutmon, M., König, M., Welzen, M. V., Hiroi, N., Lopata, O., Klemmer, P., Overall, R., Hofer, T., Satagopam, V., Schneider, R., Teunis, M., Geris, L., & Ostaszewski, M. (2026). User-driven development and evaluation of an agentic framework for analysis of large pathway diagrams. Bioinformatics Advances. https://doi.org/10.1093/bioadv/vbag277

Source records

crossref · retrieved 2026-11-05T12:05:04.575Z