Amaranth: enhanced single-cell transcript assembly via discriminative modelling of UMI reads and internal reads

Xiaofei Carl Zang, Tasfia Zahin, Irtesam Mahmud Khan, Qian Shi, Yi Xing, Mingfu Shao

Open source

DOI: 10.1093/bioinformatics/btag292
Published: 2026-07-01
Container: Bioinformatics
Publisher: Oxford University Press (OUP)
Open access: unknown

Credibility signals

uncertain Score 64/100 under policy 1.0.0. This is a metadata assessment, not a judgment of the paper's conclusions.

Show all credibility signals

supportingDOI registered: A matching record was returned by Crossref. Source: Crossref; license: CC0 metadata
supportingDOI resolves: A matching record was returned by Crossref. Source: Crossref; license: CC0 metadata
not scoredDirectory of Open Access Journals: No matching DOAJ record was present in this response. No allow-list match; this is not evidence of low credibility. Source: DOAJ; license: CC0
not scoredMEDLINE indexed: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredOpenAlex core source: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredKnown publisher allow-list: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredROR affiliation: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredRetraction Watch retraction: No retraction notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
not scoredRetraction Watch expression of concern: No expression of concern notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
not scoredRetraction Watch correction: No correction notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
not scoredRetraction Watch reinstatement: No reinstatement notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
not scoredOpen access status: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredPublication license: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredPublication version: A publication version was supplied but is not scored. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer
supportingMetadata completeness: All 6 scored descriptive metadata groups are present. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer

Cite this work

BibTeX

@article{allodium:10.1093/bioinformatics/btag292,
  title = {Amaranth: enhanced single-cell transcript assembly via discriminative modelling of UMI reads and internal reads},
  author = {Xiaofei Carl Zang and Tasfia Zahin and Irtesam Mahmud Khan and Qian Shi and Yi Xing and Mingfu Shao},
  year = {2026},
  journal = {Bioinformatics},
  doi = {10.1093/bioinformatics/btag292},
  url = {https://doi.org/10.1093/bioinformatics/btag292}
}

RIS

TY  - JOUR
TI  - Amaranth: enhanced single-cell transcript assembly via discriminative modelling of UMI reads and internal reads
AU  - Xiaofei Carl Zang
AU  - Tasfia Zahin
AU  - Irtesam Mahmud Khan
AU  - Qian Shi
AU  - Yi Xing
AU  - Mingfu Shao
PY  - 2026
JO  - Bioinformatics
DO  - 10.1093/bioinformatics/btag292
UR  - https://doi.org/10.1093/bioinformatics/btag292
ER  -

APA

Zang, X. C., Zahin, T., Khan, I. M., Shi, Q., Xing, Y., & Shao, M. (2026). Amaranth: enhanced single-cell transcript assembly via discriminative modelling of UMI reads and internal reads. Bioinformatics. https://doi.org/10.1093/bioinformatics/btag292

Source records

crossref · retrieved 2026-11-04T18:06:12.182Z