PathwayEmbed: a computational tool to quantify intracellular signaling transduction states from transcriptomic data.

Huang Y, Gerecht S, Kyriakides T, Raredon MSB

DOI: 10.1093/bioinformatics/btag346
Published: 2026 Jun 1
Container: Bioinformatics (Oxford, England)
Publisher: Not recorded
Open access: yes

Credibility signals

limited evidence Score 45/100 under policy 1.0.0. This is a metadata assessment, not a judgment of the paper's conclusions.

Show all credibility signals

cautionDOI registered: No matching Crossref record was present in this response. Source: Crossref; license: CC0 metadata
cautionDOI resolves: No matching Crossref record was present in this response. Source: Crossref; license: CC0 metadata
not scoredDirectory of Open Access Journals: No matching DOAJ record was present in this response. No allow-list match; this is not evidence of low credibility. Source: DOAJ; license: CC0
not scoredMEDLINE indexed: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredOpenAlex core source: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredKnown publisher allow-list: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredROR affiliation: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredRetraction Watch retraction: No retraction notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
not scoredRetraction Watch expression of concern: No expression of concern notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
not scoredRetraction Watch correction: No correction notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
not scoredRetraction Watch reinstatement: No reinstatement notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
supportingOpen access status: Normalized open-access status: open. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer
not scoredPublication license: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredPublication version: A publication version was supplied but is not scored. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer
cautionMetadata completeness: 5 of 6 scored descriptive metadata groups are present; missing fields increase uncertainty. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer

Cite this work

BibTeX

@article{allodium:10.1093/bioinformatics/btag346,
  title = {PathwayEmbed: a computational tool to quantify intracellular signaling transduction states from transcriptomic data.},
  author = {Huang Y and Gerecht S and Kyriakides T and Raredon MSB},
  year = {2026},
  journal = {Bioinformatics (Oxford, England)},
  doi = {10.1093/bioinformatics/btag346},
  url = {https://doi.org/10.1093/bioinformatics/btag346}
}

RIS

TY  - JOUR
TI  - PathwayEmbed: a computational tool to quantify intracellular signaling transduction states from transcriptomic data.
AU  - Huang Y
AU  - Gerecht S
AU  - Kyriakides T
AU  - Raredon MSB
PY  - 2026
JO  - Bioinformatics (Oxford, England)
DO  - 10.1093/bioinformatics/btag346
UR  - https://doi.org/10.1093/bioinformatics/btag346
ER  -

APA

Y, H., S, G., T, K., & MSB, R. (2026). PathwayEmbed: a computational tool to quantify intracellular signaling transduction states from transcriptomic data.. Bioinformatics (Oxford, England). https://doi.org/10.1093/bioinformatics/btag346

Source records

pubmed · retrieved 2026-09-26T04:11:11.613Z