Accelerating inference in genomic and proteomic foundation models via speculative decoding.

Provatas K, Karatzikos A, Koilakos C, Patsakis M, Tzanakakis A, Nayak A, Pavlopoulos GA, Mouratidis I, Avgoulas EI, Georgakopoulos-Soares I

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DOI: 10.1093/bioinformatics/btag579
Published: 2026 Aug 3
Container: Bioinformatics (Oxford, England)
Publisher: Not recorded
Open access: yes

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Cite this work

BibTeX

@article{allodium:10.1093/bioinformatics/btag579,
  title = {Accelerating inference in genomic and proteomic foundation models via speculative decoding.},
  author = {Provatas K and Karatzikos A and Koilakos C and Patsakis M and Tzanakakis A and Nayak A and Pavlopoulos GA and Mouratidis I and Avgoulas EI and Georgakopoulos-Soares I},
  year = {2026},
  journal = {Bioinformatics (Oxford, England)},
  doi = {10.1093/bioinformatics/btag579},
  url = {https://doi.org/10.1093/bioinformatics/btag579}
}

RIS

TY  - JOUR
TI  - Accelerating inference in genomic and proteomic foundation models via speculative decoding.
AU  - Provatas K
AU  - Karatzikos A
AU  - Koilakos C
AU  - Patsakis M
AU  - Tzanakakis A
AU  - Nayak A
AU  - Pavlopoulos GA
AU  - Mouratidis I
AU  - Avgoulas EI
AU  - Georgakopoulos-Soares I
PY  - 2026
JO  - Bioinformatics (Oxford, England)
DO  - 10.1093/bioinformatics/btag579
UR  - https://doi.org/10.1093/bioinformatics/btag579
ER  -

APA

K, P., A, K., C, K., M, P., A, T., A, N., GA, P., I, M., EI, A., & I, G. (2026). Accelerating inference in genomic and proteomic foundation models via speculative decoding.. Bioinformatics (Oxford, England). https://doi.org/10.1093/bioinformatics/btag579

Source records

pubmed · retrieved 2026-09-25T06:34:36.187Z