BioSimulators: a central registry of simulation engines and services for recommending specific tools

Bilal Shaikh, Lucian P Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S Andrews, Azraf Anwar, Moritz E Beber, Frank T Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G Bard Ermentrout, James R Faeder, Andrew P Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H Gennari, Padraig Gleeson, Anne Goelzer, Zachary Haiman, Jan Hasenauer, Joseph L Hellerstein, Henning Hermjakob, Stefan Hoops, Jon C Ison, Diego Jahn, Henry V Jakubowski, Ryann Jordan, Matúš Kalaš, Matthias König, Wolfram Liebermeister, Rahuman S Malik Sheriff, Synchon Mandal, Robert McDougal, J Kyle Medley, Pedro Mendes, Robert Müller, Chris J Myers, Aurelien Naldi, Tung V N Nguyen, David P Nickerson, Brett G Olivier, Drashti Patoliya, Loïc Paulevé, Linda R Petzold, Ankita Priya, Anand K Rampadarath, Johann M Rohwer, Ali S Saglam, Dilawar Singh, Ankur Sinha, Jacky Snoep, Hugh Sorby, Ryan Spangler, Jörn Starruß, Payton J Thomas, David van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P Goldberg, James C Schaff, Michael L Blinov, Herbert M Sauro, Ion I Moraru, Jonathan R Karr

Open source

DOI: 10.1093/nar/gkac331
Published: 2022-05-07
Container: Nucleic Acids Research
Publisher: Oxford University Press (OUP)
Open access: unknown

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Cite this work

BibTeX

@article{allodium:10.1093/nar/gkac331,
  title = {BioSimulators: a central registry of simulation engines and services for recommending specific tools},
  author = {Bilal Shaikh and Lucian P Smith and Dan Vasilescu and Gnaneswara Marupilla and Michael Wilson and Eran Agmon and Henry Agnew and Steven S Andrews and Azraf Anwar and Moritz E Beber and Frank T Bergmann and David Brooks and Lutz Brusch and Laurence Calzone and Kiri Choi and Joshua Cooper and John Detloff and Brian Drawert and Michel Dumontier and G Bard Ermentrout and James R Faeder and Andrew P Freiburger and Fabian Fröhlich and Akira Funahashi and Alan Garny and John H Gennari and Padraig Gleeson and Anne Goelzer and Zachary Haiman and Jan Hasenauer and Joseph L Hellerstein and Henning Hermjakob and Stefan Hoops and Jon C Ison and Diego Jahn and Henry V Jakubowski and Ryann Jordan and Matúš Kalaš and Matthias König and Wolfram Liebermeister and Rahuman S Malik Sheriff and Synchon Mandal and Robert McDougal and J Kyle Medley and Pedro Mendes and Robert Müller and Chris J Myers and Aurelien Naldi and Tung V N Nguyen and David P Nickerson and Brett G Olivier and Drashti Patoliya and Loïc Paulevé and Linda R Petzold and Ankita Priya and Anand K Rampadarath and Johann M Rohwer and Ali S Saglam and Dilawar Singh and Ankur Sinha and Jacky Snoep and Hugh Sorby and Ryan Spangler and Jörn Starruß and Payton J Thomas and David van Niekerk and Daniel Weindl and Fengkai Zhang and Anna Zhukova and Arthur P Goldberg and James C Schaff and Michael L Blinov and Herbert M Sauro and Ion I Moraru and Jonathan R Karr},
  year = {2022},
  journal = {Nucleic Acids Research},
  doi = {10.1093/nar/gkac331},
  url = {https://doi.org/10.1093/nar/gkac331}
}

RIS

TY  - JOUR
TI  - BioSimulators: a central registry of simulation engines and services for recommending specific tools
AU  - Bilal Shaikh
AU  - Lucian P Smith
AU  - Dan Vasilescu
AU  - Gnaneswara Marupilla
AU  - Michael Wilson
AU  - Eran Agmon
AU  - Henry Agnew
AU  - Steven S Andrews
AU  - Azraf Anwar
AU  - Moritz E Beber
AU  - Frank T Bergmann
AU  - David Brooks
AU  - Lutz Brusch
AU  - Laurence Calzone
AU  - Kiri Choi
AU  - Joshua Cooper
AU  - John Detloff
AU  - Brian Drawert
AU  - Michel Dumontier
AU  - G Bard Ermentrout
AU  - James R Faeder
AU  - Andrew P Freiburger
AU  - Fabian Fröhlich
AU  - Akira Funahashi
AU  - Alan Garny
AU  - John H Gennari
AU  - Padraig Gleeson
AU  - Anne Goelzer
AU  - Zachary Haiman
AU  - Jan Hasenauer
AU  - Joseph L Hellerstein
AU  - Henning Hermjakob
AU  - Stefan Hoops
AU  - Jon C Ison
AU  - Diego Jahn
AU  - Henry V Jakubowski
AU  - Ryann Jordan
AU  - Matúš Kalaš
AU  - Matthias König
AU  - Wolfram Liebermeister
AU  - Rahuman S Malik Sheriff
AU  - Synchon Mandal
AU  - Robert McDougal
AU  - J Kyle Medley
AU  - Pedro Mendes
AU  - Robert Müller
AU  - Chris J Myers
AU  - Aurelien Naldi
AU  - Tung V N Nguyen
AU  - David P Nickerson
AU  - Brett G Olivier
AU  - Drashti Patoliya
AU  - Loïc Paulevé
AU  - Linda R Petzold
AU  - Ankita Priya
AU  - Anand K Rampadarath
AU  - Johann M Rohwer
AU  - Ali S Saglam
AU  - Dilawar Singh
AU  - Ankur Sinha
AU  - Jacky Snoep
AU  - Hugh Sorby
AU  - Ryan Spangler
AU  - Jörn Starruß
AU  - Payton J Thomas
AU  - David van Niekerk
AU  - Daniel Weindl
AU  - Fengkai Zhang
AU  - Anna Zhukova
AU  - Arthur P Goldberg
AU  - James C Schaff
AU  - Michael L Blinov
AU  - Herbert M Sauro
AU  - Ion I Moraru
AU  - Jonathan R Karr
PY  - 2022
JO  - Nucleic Acids Research
DO  - 10.1093/nar/gkac331
UR  - https://doi.org/10.1093/nar/gkac331
ER  -

APA

Shaikh, B., Smith, L. P., Vasilescu, D., Marupilla, G., Wilson, M., Agmon, E., Agnew, H., Andrews, S. S., Anwar, A., Beber, M. E., Bergmann, F. T., Brooks, D., Brusch, L., Calzone, L., Choi, K., Cooper, J., Detloff, J., Drawert, B., Dumontier, M., Ermentrout, G. B., Faeder, J. R., Freiburger, A. P., Fröhlich, F., Funahashi, A., Garny, A., Gennari, J. H., Gleeson, P., Goelzer, A., Haiman, Z., Hasenauer, J., Hellerstein, J. L., Hermjakob, H., Hoops, S., Ison, J. C., Jahn, D., Jakubowski, H. V., Jordan, R., Kalaš, M., König, M., Liebermeister, W., Sheriff, R. S. M., Mandal, S., McDougal, R., Medley, J. K., Mendes, P., Müller, R., Myers, C. J., Naldi, A., Nguyen, T. V. N., Nickerson, D. P., Olivier, B. G., Patoliya, D., Paulevé, L., Petzold, L. R., Priya, A., Rampadarath, A. K., Rohwer, J. M., Saglam, A. S., Singh, D., Sinha, A., Snoep, J., Sorby, H., Spangler, R., Starruß, J., Thomas, P. J., Niekerk, D. V., Weindl, D., Zhang, F., Zhukova, A., Goldberg, A. P., Schaff, J. C., Blinov, M. L., Sauro, H. M., Moraru, I. I., & Karr, J. R. (2022). BioSimulators: a central registry of simulation engines and services for recommending specific tools. Nucleic Acids Research. https://doi.org/10.1093/nar/gkac331

Source records

crossref · retrieved 2026-09-25T04:02:49.294Z