Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi.

Ingle DJ, Hawkey J, Hunt M, Iqbal Z, Keane JA, Afolayan AO, Ahmed N, Andleeb S, Ashton PM, Bogoch II, Carey ME, Chattaway MA, Crump JA, Guevara PD, Howden BP, Izumiya H, Jacob JJ, Judd LM, Kapil A, Keddy KH, Kim JY, Levine MM, Morita M, Nair S, Octavia S, Okeke IN, Osadebamwen PE, Rahman SIA, Rokney A, Rasko DA, Shamanna V, Sikorski MJ, Smith AM, Sunmonu GT, Tagg KA, Wick RR, Dyson ZA, Holt KE, Global Typhoid Genomics Consortium

Open source

DOI
10.1101/2024.09.30.613582
Published
2025 Jul 31
Container
bioRxiv : the preprint server for biology
Publisher
Not recorded
Open access
yes

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BibTeX

@article{allodium:10.1101/2024.09.30.613582,
  title = {Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi.},
  author = {Ingle DJ and Hawkey J and Hunt M and Iqbal Z and Keane JA and Afolayan AO and Ahmed N and Andleeb S and Ashton PM and Bogoch II and Carey ME and Chattaway MA and Crump JA and Guevara PD and Howden BP and Izumiya H and Jacob JJ and Judd LM and Kapil A and Keddy KH and Kim JY and Levine MM and Morita M and Nair S and Octavia S and Okeke IN and Osadebamwen PE and Rahman SIA and Rokney A and Rasko DA and Shamanna V and Sikorski MJ and Smith AM and Sunmonu GT and Tagg KA and Wick RR and Dyson ZA and Holt KE and Global Typhoid Genomics Consortium},
  year = {2025},
  journal = {bioRxiv : the preprint server for biology},
  doi = {10.1101/2024.09.30.613582},
  url = {https://doi.org/10.1101/2024.09.30.613582}
}

RIS

TY  - JOUR
TI  - Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi.
AU  - Ingle DJ
AU  - Hawkey J
AU  - Hunt M
AU  - Iqbal Z
AU  - Keane JA
AU  - Afolayan AO
AU  - Ahmed N
AU  - Andleeb S
AU  - Ashton PM
AU  - Bogoch II
AU  - Carey ME
AU  - Chattaway MA
AU  - Crump JA
AU  - Guevara PD
AU  - Howden BP
AU  - Izumiya H
AU  - Jacob JJ
AU  - Judd LM
AU  - Kapil A
AU  - Keddy KH
AU  - Kim JY
AU  - Levine MM
AU  - Morita M
AU  - Nair S
AU  - Octavia S
AU  - Okeke IN
AU  - Osadebamwen PE
AU  - Rahman SIA
AU  - Rokney A
AU  - Rasko DA
AU  - Shamanna V
AU  - Sikorski MJ
AU  - Smith AM
AU  - Sunmonu GT
AU  - Tagg KA
AU  - Wick RR
AU  - Dyson ZA
AU  - Holt KE
AU  - Global Typhoid Genomics Consortium
PY  - 2025
JO  - bioRxiv : the preprint server for biology
DO  - 10.1101/2024.09.30.613582
UR  - https://doi.org/10.1101/2024.09.30.613582
ER  -

APA

DJ, I., J, H., M, H., Z, I., JA, K., AO, A., N, A., S, A., PM, A., II, B., ME, C., MA, C., JA, C., PD, G., BP, H., H, I., JJ, J., LM, J., A, K., KH, K., JY, K., MM, L., M, M., S, N., S, O., IN, O., PE, O., SIA, R., A, R., DA, R., V, S., MJ, S., AM, S., GT, S., KA, T., RR, W., ZA, D., KE, H., & Consortium, G. T. G. (2025). Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi.. bioRxiv : the preprint server for biology. https://doi.org/10.1101/2024.09.30.613582

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