ColonyPy: a Python-based image analysis pipeline to quantify tolerance and heteroresistance in <i>Cryptococcus neoformans</i>

Priscilla Atim, Muhammed Owiny Khalil, David B. Meya, Kimberly Martinez, Evan Hall, Benedict Kanamwanji, Grace Najjuka, Atuhaire D. Winfred, Jonathan Kabazzi, Adella Atukunda, Kirsten Nielsen

Open source

DOI: 10.1128/spectrum.02299-26
Published: 2026-11-06
Container: Microbiology Spectrum
Publisher: American Society for Microbiology
Open access: unknown

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Cite this work

BibTeX

@article{allodium:10.1128/spectrum.02299-26,
  title = {ColonyPy: a Python-based image analysis pipeline to quantify tolerance and heteroresistance in
                    <i>Cryptococcus neoformans</i>},
  author = {Priscilla Atim and Muhammed Owiny Khalil and David B. Meya and Kimberly Martinez and Evan Hall and Benedict Kanamwanji and Grace Najjuka and Atuhaire D. Winfred and Jonathan Kabazzi and Adella Atukunda and Kirsten Nielsen},
  year = {2026},
  journal = {Microbiology Spectrum},
  doi = {10.1128/spectrum.02299-26},
  url = {https://doi.org/10.1128/spectrum.02299-26}
}

RIS

TY  - JOUR
TI  - ColonyPy: a Python-based image analysis pipeline to quantify tolerance and heteroresistance in
                    <i>Cryptococcus neoformans</i>
AU  - Priscilla Atim
AU  - Muhammed Owiny Khalil
AU  - David B. Meya
AU  - Kimberly Martinez
AU  - Evan Hall
AU  - Benedict Kanamwanji
AU  - Grace Najjuka
AU  - Atuhaire D. Winfred
AU  - Jonathan Kabazzi
AU  - Adella Atukunda
AU  - Kirsten Nielsen
PY  - 2026
JO  - Microbiology Spectrum
DO  - 10.1128/spectrum.02299-26
UR  - https://doi.org/10.1128/spectrum.02299-26
ER  -

APA

Atim, P., Khalil, M. O., Meya, D. B., Martinez, K., Hall, E., Kanamwanji, B., Najjuka, G., Winfred, A. D., Kabazzi, J., Atukunda, A., & Nielsen, K. (2026). ColonyPy: a Python-based image analysis pipeline to quantify tolerance and heteroresistance in <i>Cryptococcus neoformans</i>. Microbiology Spectrum. https://doi.org/10.1128/spectrum.02299-26

Source records

crossref · retrieved 2026-11-10T09:44:23.555Z