Automated integration of multi-slice spatial transcriptomics data in 2D and 3D using VR-Omics.

Bienroth D, Charitakis N, Wong D, Zhang YC, Jaeger-Honz S, Ding J, Watt KI, Stolper J, Chambers-Smith H, MacGregor D, Christiansen B, Vivien C, Piers AT, Waylen LN, Hoffmann LB, Tang J, La HM, Du MRM, Mohenska M, Polo JM, Grimmond S, Scott E, Rossello FJ, Porrello ER, Klein K, Nim HT, Elliott DA, Schreiber F, Ramialison M

Open source

DOI: 10.1186/s13059-025-03630-6
Published: 2025 Jul 2
Container: Genome biology
Publisher: Not recorded
Open access: yes

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Cite this work

BibTeX

@article{allodium:10.1186/s13059-025-03630-6,
  title = {Automated integration of multi-slice spatial transcriptomics data in 2D and 3D using VR-Omics.},
  author = {Bienroth D and Charitakis N and Wong D and Zhang YC and Jaeger-Honz S and Ding J and Watt KI and Stolper J and Chambers-Smith H and MacGregor D and Christiansen B and Vivien C and Piers AT and Waylen LN and Hoffmann LB and Tang J and La HM and Du MRM and Mohenska M and Polo JM and Grimmond S and Scott E and Rossello FJ and Porrello ER and Klein K and Nim HT and Elliott DA and Schreiber F and Ramialison M},
  year = {2025},
  journal = {Genome biology},
  doi = {10.1186/s13059-025-03630-6},
  url = {https://doi.org/10.1186/s13059-025-03630-6}
}

RIS

TY  - JOUR
TI  - Automated integration of multi-slice spatial transcriptomics data in 2D and 3D using VR-Omics.
AU  - Bienroth D
AU  - Charitakis N
AU  - Wong D
AU  - Zhang YC
AU  - Jaeger-Honz S
AU  - Ding J
AU  - Watt KI
AU  - Stolper J
AU  - Chambers-Smith H
AU  - MacGregor D
AU  - Christiansen B
AU  - Vivien C
AU  - Piers AT
AU  - Waylen LN
AU  - Hoffmann LB
AU  - Tang J
AU  - La HM
AU  - Du MRM
AU  - Mohenska M
AU  - Polo JM
AU  - Grimmond S
AU  - Scott E
AU  - Rossello FJ
AU  - Porrello ER
AU  - Klein K
AU  - Nim HT
AU  - Elliott DA
AU  - Schreiber F
AU  - Ramialison M
PY  - 2025
JO  - Genome biology
DO  - 10.1186/s13059-025-03630-6
UR  - https://doi.org/10.1186/s13059-025-03630-6
ER  -

APA

D, B., N, C., D, W., YC, Z., S, J., J, D., KI, W., J, S., H, C., D, M., B, C., C, V., AT, P., LN, W., LB, H., J, T., HM, L., MRM, D., M, M., JM, P., S, G., E, S., FJ, R., ER, P., K, K., HT, N., DA, E., F, S., & M, R. (2025). Automated integration of multi-slice spatial transcriptomics data in 2D and 3D using VR-Omics.. Genome biology. https://doi.org/10.1186/s13059-025-03630-6

Source records

pubmed · retrieved 2026-09-25T22:57:16.298Z
europe-pmc · retrieved 2026-09-25T22:57:16.318Z
doaj · retrieved 2026-09-25T22:57:16.318Z