Empowering bioinformatics communities with Nextflow and nf-core

Björn E. Langer, Andreia Amaral, Marie-Odile Baudement, Franziska Bonath, Mathieu Charles, Praveen Krishna Chitneedi, Emily L. Clark, Paolo Di Tommaso, Sarah Djebali, Philip A. Ewels, Sonia Eynard, James A. Fellows Yates, Daniel Fischer, Evan W. Floden, Sylvain Foissac, Gisela Gabernet, Maxime U. Garcia, Gareth Gillard, Manu Kumar Gundappa, Cervin Guyomar, Christopher Hakkaart, Friederike Hanssen, Peter W. Harrison, Matthias Hörtenhuber, Cyril Kurylo, Christa Kühn, Sandrine Lagarrigue, Delphine Lallias, Daniel J. Macqueen, Edmund Miller, Júlia Mir-Pedrol, Gabriel Costa Monteiro Moreira, Sven Nahnsen, Harshil Patel, Alexander Peltzer, Frederique Pitel, Yuliaxis Ramayo-Caldas, Marcel da Câmara Ribeiro-Dantas, Dominique Rocha, Mazdak Salavati, Alexey Sokolov, Jose Espinosa-Carrasco, Cedric Notredame, the nf-core community

Open source

DOI: 10.1186/s13059-025-03673-9
Published: 2025-07-29
Container: Genome Biology
Publisher: Springer Science and Business Media LLC
Open access: unknown

Credibility signals

uncertain Score 64/100 under policy 1.0.0. This is a metadata assessment, not a judgment of the paper's conclusions.

Show all credibility signals

supportingDOI registered: A matching record was returned by Crossref. Source: Crossref; license: CC0 metadata
supportingDOI resolves: A matching record was returned by Crossref. Source: Crossref; license: CC0 metadata
not scoredDirectory of Open Access Journals: No matching DOAJ record was present in this response. No allow-list match; this is not evidence of low credibility. Source: DOAJ; license: CC0
not scoredMEDLINE indexed: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredOpenAlex core source: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredKnown publisher allow-list: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredROR affiliation: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredRetraction Watch retraction: No retraction notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
not scoredRetraction Watch expression of concern: No expression of concern notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
not scoredRetraction Watch correction: No correction notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
not scoredRetraction Watch reinstatement: No reinstatement notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
not scoredOpen access status: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredPublication license: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredPublication version: A publication version was supplied but is not scored. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer
supportingMetadata completeness: All 6 scored descriptive metadata groups are present. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer

Cite this work

BibTeX

@article{allodium:10.1186/s13059-025-03673-9,
  title = {Empowering bioinformatics communities with Nextflow and nf-core},
  author = {Björn E. Langer and Andreia Amaral and Marie-Odile Baudement and Franziska Bonath and Mathieu Charles and Praveen Krishna Chitneedi and Emily L. Clark and Paolo Di Tommaso and Sarah Djebali and Philip A. Ewels and Sonia Eynard and James A. Fellows Yates and Daniel Fischer and Evan W. Floden and Sylvain Foissac and Gisela Gabernet and Maxime U. Garcia and Gareth Gillard and Manu Kumar Gundappa and Cervin Guyomar and Christopher Hakkaart and Friederike Hanssen and Peter W. Harrison and Matthias Hörtenhuber and Cyril Kurylo and Christa Kühn and Sandrine Lagarrigue and Delphine Lallias and Daniel J. Macqueen and Edmund Miller and Júlia Mir-Pedrol and Gabriel Costa Monteiro Moreira and Sven Nahnsen and Harshil Patel and Alexander Peltzer and Frederique Pitel and Yuliaxis Ramayo-Caldas and Marcel da Câmara Ribeiro-Dantas and Dominique Rocha and Mazdak Salavati and Alexey Sokolov and Jose Espinosa-Carrasco and Cedric Notredame and the nf-core community},
  year = {2025},
  journal = {Genome Biology},
  doi = {10.1186/s13059-025-03673-9},
  url = {https://doi.org/10.1186/s13059-025-03673-9}
}

RIS

TY  - JOUR
TI  - Empowering bioinformatics communities with Nextflow and nf-core
AU  - Björn E. Langer
AU  - Andreia Amaral
AU  - Marie-Odile Baudement
AU  - Franziska Bonath
AU  - Mathieu Charles
AU  - Praveen Krishna Chitneedi
AU  - Emily L. Clark
AU  - Paolo Di Tommaso
AU  - Sarah Djebali
AU  - Philip A. Ewels
AU  - Sonia Eynard
AU  - James A. Fellows Yates
AU  - Daniel Fischer
AU  - Evan W. Floden
AU  - Sylvain Foissac
AU  - Gisela Gabernet
AU  - Maxime U. Garcia
AU  - Gareth Gillard
AU  - Manu Kumar Gundappa
AU  - Cervin Guyomar
AU  - Christopher Hakkaart
AU  - Friederike Hanssen
AU  - Peter W. Harrison
AU  - Matthias Hörtenhuber
AU  - Cyril Kurylo
AU  - Christa Kühn
AU  - Sandrine Lagarrigue
AU  - Delphine Lallias
AU  - Daniel J. Macqueen
AU  - Edmund Miller
AU  - Júlia Mir-Pedrol
AU  - Gabriel Costa Monteiro Moreira
AU  - Sven Nahnsen
AU  - Harshil Patel
AU  - Alexander Peltzer
AU  - Frederique Pitel
AU  - Yuliaxis Ramayo-Caldas
AU  - Marcel da Câmara Ribeiro-Dantas
AU  - Dominique Rocha
AU  - Mazdak Salavati
AU  - Alexey Sokolov
AU  - Jose Espinosa-Carrasco
AU  - Cedric Notredame
AU  - the nf-core community
PY  - 2025
JO  - Genome Biology
DO  - 10.1186/s13059-025-03673-9
UR  - https://doi.org/10.1186/s13059-025-03673-9
ER  -

APA

Langer, B. E., Amaral, A., Baudement, M., Bonath, F., Charles, M., Chitneedi, P. K., Clark, E. L., Tommaso, P. D., Djebali, S., Ewels, P. A., Eynard, S., Yates, J. A. F., Fischer, D., Floden, E. W., Foissac, S., Gabernet, G., Garcia, M. U., Gillard, G., Gundappa, M. K., Guyomar, C., Hakkaart, C., Hanssen, F., Harrison, P. W., Hörtenhuber, M., Kurylo, C., Kühn, C., Lagarrigue, S., Lallias, D., Macqueen, D. J., Miller, E., Mir-Pedrol, J., Moreira, G. C. M., Nahnsen, S., Patel, H., Peltzer, A., Pitel, F., Ramayo-Caldas, Y., Ribeiro-Dantas, M. D. C., Rocha, D., Salavati, M., Sokolov, A., Espinosa-Carrasco, J., Notredame, C., & community, T. N. (2025). Empowering bioinformatics communities with Nextflow and nf-core. Genome Biology. https://doi.org/10.1186/s13059-025-03673-9

Source records

crossref · retrieved 2026-09-26T07:00:55.799Z