Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi

Danielle J. Ingle, Jane Hawkey, Martin Hunt, Zamin Iqbal, Jacqueline A. Keane, Ayorinde O. Afolayan, Niyaz Ahmed, Saadia Andleeb, Philip M. Ashton, Isaac I. Bogoch, Megan E. Carey, Marie Anne Chattaway, John A. Crump, Paula Diaz Guevara, Benjamin P. Howden, Hidemasa Izumiya, Jobin John Jacob, Louise M. Judd, Arti Kapil, Karen H. Keddy, Justin Y. Kim, Myron M. Levine, Masatomo Morita, Satheesh Nair, Sophie Octavia, Iruka N. Okeke, Precious E. Osadebamwen, Sadia Isfat Ara Rahman, Assaf Rokney, David A. Rasko, Varun Shamanna, Michael J. Sikorski, Anthony M. Smith, Gabriel T. Sunmonu, Kaitlin A. Tagg, Ryan R. Wick, Zoe A. Dyson, Kathryn E. Holt, Unknown

Open source

DOI: 10.1186/s13073-025-01551-4
Published: 2025-10-24
Container: Genome Medicine
Publisher: Springer Science and Business Media LLC
Open access: unknown

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Cite this work

BibTeX

@article{allodium:10.1186/s13073-025-01551-4,
  title = {Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi},
  author = {Danielle J. Ingle and Jane Hawkey and Martin Hunt and Zamin Iqbal and Jacqueline A. Keane and Ayorinde O. Afolayan and Niyaz Ahmed and Saadia Andleeb and Philip M. Ashton and Isaac I. Bogoch and Megan E. Carey and Marie Anne Chattaway and John A. Crump and Paula Diaz Guevara and Benjamin P. Howden and Hidemasa Izumiya and Jobin John Jacob and Louise M. Judd and Arti Kapil and Karen H. Keddy and Justin Y. Kim and Myron M. Levine and Masatomo Morita and Satheesh Nair and Sophie Octavia and Iruka N. Okeke and Precious E. Osadebamwen and Sadia Isfat Ara Rahman and Assaf Rokney and David A. Rasko and Varun Shamanna and Michael J. Sikorski and Anthony M. Smith and Gabriel T. Sunmonu and Kaitlin A. Tagg and Ryan R. Wick and Zoe A. Dyson and Kathryn E. Holt and Unknown},
  year = {2025},
  journal = {Genome Medicine},
  doi = {10.1186/s13073-025-01551-4},
  url = {https://doi.org/10.1186/s13073-025-01551-4}
}

RIS

TY  - JOUR
TI  - Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi
AU  - Danielle J. Ingle
AU  - Jane Hawkey
AU  - Martin Hunt
AU  - Zamin Iqbal
AU  - Jacqueline A. Keane
AU  - Ayorinde O. Afolayan
AU  - Niyaz Ahmed
AU  - Saadia Andleeb
AU  - Philip M. Ashton
AU  - Isaac I. Bogoch
AU  - Megan E. Carey
AU  - Marie Anne Chattaway
AU  - John A. Crump
AU  - Paula Diaz Guevara
AU  - Benjamin P. Howden
AU  - Hidemasa Izumiya
AU  - Jobin John Jacob
AU  - Louise M. Judd
AU  - Arti Kapil
AU  - Karen H. Keddy
AU  - Justin Y. Kim
AU  - Myron M. Levine
AU  - Masatomo Morita
AU  - Satheesh Nair
AU  - Sophie Octavia
AU  - Iruka N. Okeke
AU  - Precious E. Osadebamwen
AU  - Sadia Isfat Ara Rahman
AU  - Assaf Rokney
AU  - David A. Rasko
AU  - Varun Shamanna
AU  - Michael J. Sikorski
AU  - Anthony M. Smith
AU  - Gabriel T. Sunmonu
AU  - Kaitlin A. Tagg
AU  - Ryan R. Wick
AU  - Zoe A. Dyson
AU  - Kathryn E. Holt
AU  - Unknown
PY  - 2025
JO  - Genome Medicine
DO  - 10.1186/s13073-025-01551-4
UR  - https://doi.org/10.1186/s13073-025-01551-4
ER  -

APA

Ingle, D. J., Hawkey, J., Hunt, M., Iqbal, Z., Keane, J. A., Afolayan, A. O., Ahmed, N., Andleeb, S., Ashton, P. M., Bogoch, I. I., Carey, M. E., Chattaway, M. A., Crump, J. A., Guevara, P. D., Howden, B. P., Izumiya, H., Jacob, J. J., Judd, L. M., Kapil, A., Keddy, K. H., Kim, J. Y., Levine, M. M., Morita, M., Nair, S., Octavia, S., Okeke, I. N., Osadebamwen, P. E., Rahman, S. I. A., Rokney, A., Rasko, D. A., Shamanna, V., Sikorski, M. J., Smith, A. M., Sunmonu, G. T., Tagg, K. A., Wick, R. R., Dyson, Z. A., Holt, K. E., & Unknown (2025). Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi. Genome Medicine. https://doi.org/10.1186/s13073-025-01551-4

Source records

crossref · retrieved 2026-09-26T16:48:22.540Z