A reproducible Snakemake pipeline to analyse Illumina paired-end data from ChiP-Seq experiments

Jihed Chouaref, Mattijs Bliek, Marc Galland

Open source

DOI: 10.21105/joss.01465
Published: 2019-06-06
Container: Journal of Open Source Software
Publisher: The Open Journal
Open access: unknown

Credibility signals

uncertain Score 64/100 under policy 1.0.0. This is a metadata assessment, not a judgment of the paper's conclusions.

Show all credibility signals

supportingDOI registered: A matching record was returned by Crossref. Source: Crossref; license: CC0 metadata
supportingDOI resolves: A matching record was returned by Crossref. Source: Crossref; license: CC0 metadata
not scoredDirectory of Open Access Journals: No matching DOAJ record was present in this response. No allow-list match; this is not evidence of low credibility. Source: DOAJ; license: CC0
not scoredMEDLINE indexed: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredOpenAlex core source: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredKnown publisher allow-list: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredROR affiliation: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredRetraction Watch retraction: No retraction notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
not scoredRetraction Watch expression of concern: No expression of concern notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
not scoredRetraction Watch correction: No correction notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
not scoredRetraction Watch reinstatement: No reinstatement notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
not scoredOpen access status: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredPublication license: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredPublication version: A publication version was supplied but is not scored. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer
supportingMetadata completeness: All 6 scored descriptive metadata groups are present. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer

Cite this work

BibTeX

@article{allodium:10.21105/joss.01465,
  title = {A reproducible Snakemake pipeline to analyse Illumina paired-end data from ChiP-Seq experiments},
  author = {Jihed Chouaref and Mattijs Bliek and Marc Galland},
  year = {2019},
  journal = {Journal of Open Source Software},
  doi = {10.21105/joss.01465},
  url = {https://doi.org/10.21105/joss.01465}
}

RIS

TY  - JOUR
TI  - A reproducible Snakemake pipeline to analyse Illumina paired-end data from ChiP-Seq experiments
AU  - Jihed Chouaref
AU  - Mattijs Bliek
AU  - Marc Galland
PY  - 2019
JO  - Journal of Open Source Software
DO  - 10.21105/joss.01465
UR  - https://doi.org/10.21105/joss.01465
ER  -

APA

Chouaref, J., Bliek, M., & Galland, M. (2019). A reproducible Snakemake pipeline to analyse Illumina paired-end data from ChiP-Seq experiments. Journal of Open Source Software. https://doi.org/10.21105/joss.01465

Source records

crossref · retrieved 2026-09-27T05:21:04.674Z