A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data

Pieter Dorrestein, Simone Zuffa, Robin Schmid, Anelize Bauermeister, Paulo Wender Portal Gomes, Andres Caraballo-Rodriguez, Yasin El Abiead, Allegra Aron, Emily Gentry, Jasmine Zemlin, Michael Meehan, Nicole Avalon, Robert Cichewicz, Ekaterina Buzun, Marvic Carrillo-Terrazas, Chia-Yun Hsu, Renee Oles, Adriana Vasquez Ayala, Jiaqi Zhao, Hiutung Chu, Mirte Kuijpers, Sara Jackrel, Fidele Tugizimana, Lerato Nephali, Ian Dubery, Ntakadzeni Madala, Eduarda Moreira, Leticia Costa-Lotufo, Norberto Lopes, Paula Rezende-Teixeira, Paula Jimenez, Bipin Rimal, Andrew Patterson, Matthew Traxler, Rita de Cassia Pessotti, Daniel Alvarado-Villalobos, Giselle Tamayo-Castillo, Priscila Chaverri, Efrain Escudero-Leyva, Luis-Manuel Quiros-Guerrero, Alexandre Bory, Juliette Joubert, Adriano Rutz, Jean-Luc Wolfender, Pierre-Marie Allard, Andreas Sichert, Sammy Pontrelli, Benjamin Pullman, Nuno Bandeira, William Gerwick, Katia Gindro, Josep Massana-Codina, Berenike Wagner, Karl Forchhammer, Daniel Petras, Nicole Aiosa, Neha Garg, Manuel Liebeke, Patric Bourceau, Kyo Bin Kang, Henna Gadhavi, Luiz Pedro de Carvalho, Mariana Silva dos Santos, Alicia Pérez-Lorente, Carlos Molina-Santiago, Diego Romero, Raimo Franke, Mark Broenstrup, Arturo Vera Ponce De Leon, Phillip Pope, Sabina La Rosa, Giorgia La Barbera, Henrik Roager, Martin Laursen, Fabian Hammerle, Bianka Siewert, Ursula Peintner, Cuauhtemoc Licona-Cassani, Lorena Rodriguez-Orduña, Evelyn Rampler, Felina Hildebrand, Gunda Koellensperger, Harald Schoeny, Katharina Hohenwallner, Lisa Panzenboeck, Rachel Gregor, Ellis O'Neill, Eve Roxborough, Jane Odoi, Nicole Bale, Su Ding, Jaap S. Sinninghe Damsté, Xueli Guan, Jerry Cui, Kou-San Ju, Denise Silva, Fernanda Silva, Gilvan da Silva, Hector Koolen, Carlismari Grundmann, Jason Clement, Hosein Mohimani, Kirk Broders, Kerry McPhail, Sidnee Ober-Singleton, Christopher Rath, Daniel McDonald, Rob Knight, Mingxun Wang

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DOI: 10.21203/rs.3.rs-3189768/v1
Published: 2023-08-03
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Publisher: Springer Science and Business Media LLC
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Cite this work

BibTeX

@article{allodium:10.21203/rs.3.rs-3189768/v1,
  title = {A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data},
  author = {Pieter Dorrestein and Simone Zuffa and Robin Schmid and Anelize Bauermeister and Paulo Wender Portal Gomes and Andres Caraballo-Rodriguez and Yasin El Abiead and Allegra Aron and Emily Gentry and Jasmine Zemlin and Michael Meehan and Nicole Avalon and Robert Cichewicz and Ekaterina Buzun and Marvic Carrillo-Terrazas and Chia-Yun Hsu and Renee Oles and Adriana Vasquez Ayala and Jiaqi Zhao and Hiutung Chu and Mirte Kuijpers and Sara Jackrel and Fidele Tugizimana and Lerato Nephali and Ian Dubery and Ntakadzeni Madala and Eduarda Moreira and Leticia Costa-Lotufo and Norberto Lopes and Paula Rezende-Teixeira and Paula Jimenez and Bipin Rimal and Andrew Patterson and Matthew Traxler and Rita de Cassia Pessotti and Daniel Alvarado-Villalobos and Giselle Tamayo-Castillo and Priscila Chaverri and Efrain Escudero-Leyva and Luis-Manuel Quiros-Guerrero and Alexandre Bory and Juliette Joubert and Adriano Rutz and Jean-Luc Wolfender and Pierre-Marie Allard and Andreas Sichert and Sammy Pontrelli and Benjamin Pullman and Nuno Bandeira and William Gerwick and Katia Gindro and Josep Massana-Codina and Berenike Wagner and Karl Forchhammer and Daniel Petras and Nicole Aiosa and Neha Garg and Manuel Liebeke and Patric Bourceau and Kyo Bin Kang and Henna Gadhavi and Luiz Pedro de Carvalho and Mariana Silva dos Santos and Alicia Pérez-Lorente and Carlos Molina-Santiago and Diego Romero and Raimo Franke and Mark Broenstrup and Arturo Vera Ponce De Leon and Phillip Pope and Sabina La Rosa and Giorgia La Barbera and Henrik Roager and Martin Laursen and Fabian Hammerle and Bianka Siewert and Ursula Peintner and Cuauhtemoc Licona-Cassani and Lorena Rodriguez-Orduña and Evelyn Rampler and Felina Hildebrand and Gunda Koellensperger and Harald Schoeny and Katharina Hohenwallner and Lisa Panzenboeck and Rachel Gregor and Ellis O'Neill and Eve Roxborough and Jane Odoi and Nicole Bale and Su Ding and Jaap S. Sinninghe Damsté and Xueli Guan and Jerry Cui and Kou-San Ju and Denise Silva and Fernanda Silva and Gilvan da Silva and Hector Koolen and Carlismari Grundmann and Jason Clement and Hosein Mohimani and Kirk Broders and Kerry McPhail and Sidnee Ober-Singleton and Christopher Rath and Daniel McDonald and Rob Knight and Mingxun Wang},
  year = {2023},
  doi = {10.21203/rs.3.rs-3189768/v1},
  url = {https://doi.org/10.21203/rs.3.rs-3189768/v1}
}

RIS

TY  - JOUR
TI  - A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data
AU  - Pieter Dorrestein
AU  - Simone Zuffa
AU  - Robin Schmid
AU  - Anelize Bauermeister
AU  - Paulo Wender Portal Gomes
AU  - Andres Caraballo-Rodriguez
AU  - Yasin El Abiead
AU  - Allegra Aron
AU  - Emily Gentry
AU  - Jasmine Zemlin
AU  - Michael Meehan
AU  - Nicole Avalon
AU  - Robert Cichewicz
AU  - Ekaterina Buzun
AU  - Marvic Carrillo-Terrazas
AU  - Chia-Yun Hsu
AU  - Renee Oles
AU  - Adriana Vasquez Ayala
AU  - Jiaqi Zhao
AU  - Hiutung Chu
AU  - Mirte Kuijpers
AU  - Sara Jackrel
AU  - Fidele Tugizimana
AU  - Lerato Nephali
AU  - Ian Dubery
AU  - Ntakadzeni Madala
AU  - Eduarda Moreira
AU  - Leticia Costa-Lotufo
AU  - Norberto Lopes
AU  - Paula Rezende-Teixeira
AU  - Paula Jimenez
AU  - Bipin Rimal
AU  - Andrew Patterson
AU  - Matthew Traxler
AU  - Rita de Cassia Pessotti
AU  - Daniel Alvarado-Villalobos
AU  - Giselle Tamayo-Castillo
AU  - Priscila Chaverri
AU  - Efrain Escudero-Leyva
AU  - Luis-Manuel Quiros-Guerrero
AU  - Alexandre Bory
AU  - Juliette Joubert
AU  - Adriano Rutz
AU  - Jean-Luc Wolfender
AU  - Pierre-Marie Allard
AU  - Andreas Sichert
AU  - Sammy Pontrelli
AU  - Benjamin Pullman
AU  - Nuno Bandeira
AU  - William Gerwick
AU  - Katia Gindro
AU  - Josep Massana-Codina
AU  - Berenike Wagner
AU  - Karl Forchhammer
AU  - Daniel Petras
AU  - Nicole Aiosa
AU  - Neha Garg
AU  - Manuel Liebeke
AU  - Patric Bourceau
AU  - Kyo Bin Kang
AU  - Henna Gadhavi
AU  - Luiz Pedro de Carvalho
AU  - Mariana Silva dos Santos
AU  - Alicia Pérez-Lorente
AU  - Carlos Molina-Santiago
AU  - Diego Romero
AU  - Raimo Franke
AU  - Mark Broenstrup
AU  - Arturo Vera Ponce De Leon
AU  - Phillip Pope
AU  - Sabina La Rosa
AU  - Giorgia La Barbera
AU  - Henrik Roager
AU  - Martin Laursen
AU  - Fabian Hammerle
AU  - Bianka Siewert
AU  - Ursula Peintner
AU  - Cuauhtemoc Licona-Cassani
AU  - Lorena Rodriguez-Orduña
AU  - Evelyn Rampler
AU  - Felina Hildebrand
AU  - Gunda Koellensperger
AU  - Harald Schoeny
AU  - Katharina Hohenwallner
AU  - Lisa Panzenboeck
AU  - Rachel Gregor
AU  - Ellis O'Neill
AU  - Eve Roxborough
AU  - Jane Odoi
AU  - Nicole Bale
AU  - Su Ding
AU  - Jaap S. Sinninghe Damsté
AU  - Xueli Guan
AU  - Jerry Cui
AU  - Kou-San Ju
AU  - Denise Silva
AU  - Fernanda Silva
AU  - Gilvan da Silva
AU  - Hector Koolen
AU  - Carlismari Grundmann
AU  - Jason Clement
AU  - Hosein Mohimani
AU  - Kirk Broders
AU  - Kerry McPhail
AU  - Sidnee Ober-Singleton
AU  - Christopher Rath
AU  - Daniel McDonald
AU  - Rob Knight
AU  - Mingxun Wang
PY  - 2023
DO  - 10.21203/rs.3.rs-3189768/v1
UR  - https://doi.org/10.21203/rs.3.rs-3189768/v1
ER  -

APA

Dorrestein, P., Zuffa, S., Schmid, R., Bauermeister, A., Gomes, P. W. P., Caraballo-Rodriguez, A., Abiead, Y. E., Aron, A., Gentry, E., Zemlin, J., Meehan, M., Avalon, N., Cichewicz, R., Buzun, E., Carrillo-Terrazas, M., Hsu, C., Oles, R., Ayala, A. V., Zhao, J., Chu, H., Kuijpers, M., Jackrel, S., Tugizimana, F., Nephali, L., Dubery, I., Madala, N., Moreira, E., Costa-Lotufo, L., Lopes, N., Rezende-Teixeira, P., Jimenez, P., Rimal, B., Patterson, A., Traxler, M., Pessotti, R. D. C., Alvarado-Villalobos, D., Tamayo-Castillo, G., Chaverri, P., Escudero-Leyva, E., Quiros-Guerrero, L., Bory, A., Joubert, J., Rutz, A., Wolfender, J., Allard, P., Sichert, A., Pontrelli, S., Pullman, B., Bandeira, N., Gerwick, W., Gindro, K., Massana-Codina, J., Wagner, B., Forchhammer, K., Petras, D., Aiosa, N., Garg, N., Liebeke, M., Bourceau, P., Kang, K. B., Gadhavi, H., Carvalho, L. P. D., Santos, M. S. D., Pérez-Lorente, A., Molina-Santiago, C., Romero, D., Franke, R., Broenstrup, M., Leon, A. V. P. D., Pope, P., Rosa, S. L., Barbera, G. L., Roager, H., Laursen, M., Hammerle, F., Siewert, B., Peintner, U., Licona-Cassani, C., Rodriguez-Orduña, L., Rampler, E., Hildebrand, F., Koellensperger, G., Schoeny, H., Hohenwallner, K., Panzenboeck, L., Gregor, R., O'Neill, E., Roxborough, E., Odoi, J., Bale, N., Ding, S., Damsté, J. S. S., Guan, X., Cui, J., Ju, K., Silva, D., Silva, F., Silva, G. D., Koolen, H., Grundmann, C., Clement, J., Mohimani, H., Broders, K., McPhail, K., Ober-Singleton, S., Rath, C., McDonald, D., Knight, R., & Wang, M. (2023). A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data. https://doi.org/10.21203/rs.3.rs-3189768/v1

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crossref · retrieved 2026-09-27T08:17:29.369Z