A Framework for Benchmarking Pathway Reconstruction Algorithms.

Talluri N, Figueroa-Reid T, Hiemstra J, Magnano CS, Shedivy A, Panda N, Liu Y, Sanjeev S, Anderson OF, Barelvi A, O'Brien A, Johnson OT, Haddad JA, Halberg-Spencer SA, Nurbol A, Jan I, Degbelo M, Nachreiner D, Llera-Magord C, Howland G, Li GH, Ritz A, Gitter A

Open source

DOI: 10.64898/2026.08.04.742550
Published: 2026 Aug 9
Container: bioRxiv : the preprint server for biology
Publisher: Not recorded
Open access: yes

Credibility signals

limited evidence Score 45/100 under policy 1.0.0. This is a metadata assessment, not a judgment of the paper's conclusions.

Show all credibility signals

cautionDOI registered: No matching Crossref record was present in this response. Source: Crossref; license: CC0 metadata
cautionDOI resolves: No matching Crossref record was present in this response. Source: Crossref; license: CC0 metadata
not scoredDirectory of Open Access Journals: No matching DOAJ record was present in this response. No allow-list match; this is not evidence of low credibility. Source: DOAJ; license: CC0
not scoredMEDLINE indexed: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredOpenAlex core source: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredKnown publisher allow-list: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredROR affiliation: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredRetraction Watch retraction: No retraction notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
not scoredRetraction Watch expression of concern: No expression of concern notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
not scoredRetraction Watch correction: No correction notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
not scoredRetraction Watch reinstatement: No reinstatement notice matched this DOI in the deployed snapshot. No matching event found; coverage may be incomplete. Source: Retraction Watch; license: CC BY 4.0
supportingOpen access status: Normalized open-access status: open. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer
not scoredPublication license: Not checked or no result supplied; no credibility inference made. Source: No authority result supplied; license: Unknown
not scoredPublication version: A publication version was supplied but is not scored. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer
cautionMetadata completeness: 5 of 6 scored descriptive metadata groups are present; missing fields increase uncertainty. Source: Normalized work metadata; license: Caller-provided; provenance license not supplied to scorer

Cite this work

BibTeX

@article{allodium:10.64898/2026.08.04.742550,
  title = {A Framework for Benchmarking Pathway Reconstruction Algorithms.},
  author = {Talluri N and Figueroa-Reid T and Hiemstra J and Magnano CS and Shedivy A and Panda N and Liu Y and Sanjeev S and Anderson OF and Barelvi A and O'Brien A and Johnson OT and Haddad JA and Halberg-Spencer SA and Nurbol A and Jan I and Degbelo M and Nachreiner D and Llera-Magord C and Howland G and Li GH and Ritz A and Gitter A},
  year = {2026},
  journal = {bioRxiv : the preprint server for biology},
  doi = {10.64898/2026.08.04.742550},
  url = {https://doi.org/10.64898/2026.08.04.742550}
}

RIS

TY  - JOUR
TI  - A Framework for Benchmarking Pathway Reconstruction Algorithms.
AU  - Talluri N
AU  - Figueroa-Reid T
AU  - Hiemstra J
AU  - Magnano CS
AU  - Shedivy A
AU  - Panda N
AU  - Liu Y
AU  - Sanjeev S
AU  - Anderson OF
AU  - Barelvi A
AU  - O'Brien A
AU  - Johnson OT
AU  - Haddad JA
AU  - Halberg-Spencer SA
AU  - Nurbol A
AU  - Jan I
AU  - Degbelo M
AU  - Nachreiner D
AU  - Llera-Magord C
AU  - Howland G
AU  - Li GH
AU  - Ritz A
AU  - Gitter A
PY  - 2026
JO  - bioRxiv : the preprint server for biology
DO  - 10.64898/2026.08.04.742550
UR  - https://doi.org/10.64898/2026.08.04.742550
ER  -

APA

N, T., T, F., J, H., CS, M., A, S., N, P., Y, L., S, S., OF, A., A, B., A, O., OT, J., JA, H., SA, H., A, N., I, J., M, D., D, N., C, L., G, H., GH, L., A, R., & A, G. (2026). A Framework for Benchmarking Pathway Reconstruction Algorithms.. bioRxiv : the preprint server for biology. https://doi.org/10.64898/2026.08.04.742550

Source records

pubmed · retrieved 2026-09-25T12:23:02.220Z