From Prompt to Pipeline: A Comparative Evaluation of Large Language Model Coding Agents for Reproducible Bioinformatics Pipeline Construction

Paul R. Munn, Jennifer K. Grenier

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DOI: 10.64898/2026.09.11.751004
Published: 2026-09-17
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Publisher: openRxiv
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Cite this work

BibTeX

@article{allodium:10.64898/2026.09.11.751004,
  title = {From Prompt to Pipeline: A Comparative Evaluation of Large Language Model Coding Agents for Reproducible Bioinformatics Pipeline Construction},
  author = {Paul R. Munn and Jennifer K. Grenier},
  year = {2026},
  doi = {10.64898/2026.09.11.751004},
  url = {https://doi.org/10.64898/2026.09.11.751004}
}

RIS

TY  - JOUR
TI  - From Prompt to Pipeline: A Comparative Evaluation of Large Language Model Coding Agents for Reproducible Bioinformatics Pipeline Construction
AU  - Paul R. Munn
AU  - Jennifer K. Grenier
PY  - 2026
DO  - 10.64898/2026.09.11.751004
UR  - https://doi.org/10.64898/2026.09.11.751004
ER  -

APA

Munn, P. R., & Grenier, J. K. (2026). From Prompt to Pipeline: A Comparative Evaluation of Large Language Model Coding Agents for Reproducible Bioinformatics Pipeline Construction. https://doi.org/10.64898/2026.09.11.751004

Source records

crossref · retrieved 2026-09-25T08:14:25.084Z