Genomics and Phylogenetic Studies
This cluster of papers focuses on the statistical analysis, alignment, and annotation of RNA sequencing data, including methods for transcript quantification, phylogenetic analysis, genome assembly, and quality assessment in functional genomics. It also covers tools for sequence variation analysis and metagenomics assembly.
Papers listed on taxonomy pages are the top few works per node from the OpenAlex snapshot. That list is not exhaustive and is not an endorsement. The topic map and the journal registry remain separate: there is still no authoritative topic-to-venue or topic-to-organization edge. Search is a lexical lookup, not a claim that a venue publishes a topic.
Most cited
- Basic local alignment search tool
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
- Trimmomatic: a flexible trimmer for Illumina sequence data
- The Sequence Alignment/Map format and SAMtools
- CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
- Fast and accurate short read alignment with Burrows–Wheeler transform
Most recent
- Raw sequencing data for
- Raw sequencing data for
- Custom scripts used in Vicia faba VF8137 genome
- WGS of XMMAB-163R and XMMAB-163S
- Complete mitogenome of Plagiognathops microlepis and its phylogenetic position within the subfamily Xenocyprinae (Cypriniformes: Cyprinidae)
- Machine learning interprets genome sequences to map possible microbial symbionts