Protein Structure and Dynamics
This cluster of papers focuses on the prediction and analysis of protein structures using methods such as molecular dynamics simulations, force fields, homology modeling, and circular dichroism. It also explores topics related to intrinsically disordered proteins, enzyme catalysis, and the effects of macromolecular crowding on protein behavior.
Papers listed on taxonomy pages are the top few works per node from the OpenAlex snapshot. That list is not exhaustive and is not an endorsement. The topic map and the journal registry remain separate: there is still no authoritative topic-to-venue or topic-to-organization edge. Search is a lexical lookup, not a claim that a venue publishes a topic.
Most cited
- VMD: Visual molecular dynamics
- UCSF Chimera—A visualization system for exploratory research and analysis
- Highly accurate protein structure prediction with AlphaFold
- The Protein Data Bank
- A smooth particle mesh Ewald method
- A simple method for displaying the hydropathic character of a protein
Most recent
- ANN–PSO based predictive modeling for irreversibility optimization in hydromagnetic Prandtl fluid: Keller box approach
- Can we extract physics-like energies from generative protein diffusion Models?
- HKD-Water: Exact Incremental Reevaluation of Local Perturbations in a TIP4P/2005 Molecular Water Interaction Workload
- HKD-Water: Exact Incremental Reevaluation of Local Perturbations in a TIP4P/2005 Molecular Water Interaction Workload
- Анализ водных мостиков в траекториях молекулярной динамики
- A machine learning method for calculating highly localized protein stabilities